Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Rad51-201ENSMUST00000028795 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ushbp1Q8R370 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ushbp1Q8R370 Pitpnm2-209ENSMUST00000161938 5866 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ushbp1Q8R370 Pcdha5-201ENSMUST00000192168 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ushbp1Q8R370 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ushbp1Q8R370 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ushbp1Q8R370 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ushbp1Q8R370 Appbp2-201ENSMUST00000018625 6463 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ushbp1Q8R370 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
Ushbp1Q8R370 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ushbp1Q8R370 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC16.42■□□□□ 0.22
Ushbp1Q8R370 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ushbp1Q8R370 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC16.42■□□□□ 0.22
Ushbp1Q8R370 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC16.42■□□□□ 0.22
Ushbp1Q8R370 Mir6990-201ENSMUST00000183724 91 ntBASIC16.42■□□□□ 0.22
Ushbp1Q8R370 Chchd7-201ENSMUST00000041122 672 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ushbp1Q8R370 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ushbp1Q8R370 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC16.42■□□□□ 0.22
Ushbp1Q8R370 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Ushbp1Q8R370 Hacd4-201ENSMUST00000030221 2089 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ushbp1Q8R370 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ushbp1Q8R370 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ushbp1Q8R370 Dennd1a-201ENSMUST00000102787 4342 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ushbp1Q8R370 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ushbp1Q8R370 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ushbp1Q8R370 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Ushbp1Q8R370 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Ushbp1Q8R370 Ube2o-201ENSMUST00000082152 5205 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ushbp1Q8R370 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ushbp1Q8R370 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ushbp1Q8R370 Camta1-202ENSMUST00000097774 8533 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Ushbp1Q8R370 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Ushbp1Q8R370 Gemin5-202ENSMUST00000102711 4919 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Ushbp1Q8R370 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ushbp1Q8R370 Rgl1-203ENSMUST00000111859 5092 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Ushbp1Q8R370 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ushbp1Q8R370 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ushbp1Q8R370 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ushbp1Q8R370 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ushbp1Q8R370 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
Ushbp1Q8R370 Gm5105-201ENSMUST00000053318 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ushbp1Q8R370 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ushbp1Q8R370 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ushbp1Q8R370 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ushbp1Q8R370 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ushbp1Q8R370 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Ushbp1Q8R370 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC16.41■□□□□ 0.22
Ushbp1Q8R370 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Ushbp1Q8R370 Mir7023-201ENSMUST00000185093 64 ntBASIC16.41■□□□□ 0.22
Ushbp1Q8R370 AC131187.1-201ENSMUST00000224567 809 ntBASIC16.41■□□□□ 0.22
Ushbp1Q8R370 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ushbp1Q8R370 Per3-201ENSMUST00000103204 5999 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ushbp1Q8R370 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ushbp1Q8R370 Tlr2-201ENSMUST00000029623 3014 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ushbp1Q8R370 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ushbp1Q8R370 Psmd5-201ENSMUST00000028225 4397 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ushbp1Q8R370 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ushbp1Q8R370 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Ushbp1Q8R370 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ushbp1Q8R370 Tmpo-202ENSMUST00000072239 3533 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Ushbp1Q8R370 Btd-201ENSMUST00000090147 2324 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ushbp1Q8R370 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ushbp1Q8R370 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ushbp1Q8R370 Abhd15-201ENSMUST00000094004 2662 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ushbp1Q8R370 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Ushbp1Q8R370 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC16.4■□□□□ 0.22
Ushbp1Q8R370 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ushbp1Q8R370 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Ushbp1Q8R370 Gm11788-201ENSMUST00000142520 562 ntTSL 3 BASIC16.4■□□□□ 0.22
Ushbp1Q8R370 Gm18889-201ENSMUST00000174284 929 ntBASIC16.4■□□□□ 0.22
Ushbp1Q8R370 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC16.4■□□□□ 0.22
Ushbp1Q8R370 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Ushbp1Q8R370 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC16.4■□□□□ 0.22
Ushbp1Q8R370 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ushbp1Q8R370 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Ushbp1Q8R370 Foxo1-201ENSMUST00000053764 8665 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ushbp1Q8R370 Mlec-201ENSMUST00000112121 5955 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ushbp1Q8R370 Runx2-203ENSMUST00000113572 6463 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ushbp1Q8R370 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Ushbp1Q8R370 Ppp2r5e-205ENSMUST00000220035 3135 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Ushbp1Q8R370 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Ushbp1Q8R370 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ushbp1Q8R370 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ushbp1Q8R370 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ushbp1Q8R370 Garem2-201ENSMUST00000058045 3865 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Ushbp1Q8R370 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC16.4■□□□□ 0.22
Ushbp1Q8R370 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
Ushbp1Q8R370 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
Ushbp1Q8R370 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Ushbp1Q8R370 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ushbp1Q8R370 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ushbp1Q8R370 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Ushbp1Q8R370 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ushbp1Q8R370 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.21
Ushbp1Q8R370 Eif4g3-205ENSMUST00000105831 6235 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Ushbp1Q8R370 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ushbp1Q8R370 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ushbp1Q8R370 AC131743.5-201ENSMUST00000220775 1618 ntBASIC16.39■□□□□ 0.21
Ushbp1Q8R370 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ushbp1Q8R370 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 41.5 ms