Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim47Q8C0E3 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Trim47Q8C0E3 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC16.25■□□□□ 0.19
Trim47Q8C0E3 Gm9824-201ENSMUST00000178707 561 ntBASIC16.25■□□□□ 0.19
Trim47Q8C0E3 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim47Q8C0E3 Gm18049-201ENSMUST00000208909 581 ntBASIC16.25■□□□□ 0.19
Trim47Q8C0E3 Rtl8c-201ENSMUST00000063384 401 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
Trim47Q8C0E3 Gm9768-201ENSMUST00000206007 2861 ntBASIC16.25■□□□□ 0.19
Trim47Q8C0E3 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Trim47Q8C0E3 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Trim47Q8C0E3 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim47Q8C0E3 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim47Q8C0E3 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim47Q8C0E3 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim47Q8C0E3 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim47Q8C0E3 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim47Q8C0E3 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim47Q8C0E3 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC16.25■□□□□ 0.19
Trim47Q8C0E3 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Trim47Q8C0E3 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim47Q8C0E3 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim47Q8C0E3 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC16.24■□□□□ 0.19
Trim47Q8C0E3 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC16.24■□□□□ 0.19
Trim47Q8C0E3 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim47Q8C0E3 Camta1-202ENSMUST00000097774 8533 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
Trim47Q8C0E3 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim47Q8C0E3 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim47Q8C0E3 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Trim47Q8C0E3 Wnk2-207ENSMUST00000159559 6584 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
Trim47Q8C0E3 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim47Q8C0E3 Cdr2l-201ENSMUST00000053288 3700 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim47Q8C0E3 Dab2ip-202ENSMUST00000091010 6455 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim47Q8C0E3 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim47Q8C0E3 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim47Q8C0E3 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
Trim47Q8C0E3 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
Trim47Q8C0E3 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim47Q8C0E3 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim47Q8C0E3 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim47Q8C0E3 Abhd11-202ENSMUST00000111216 972 ntTSL 3 BASIC16.24■□□□□ 0.19
Trim47Q8C0E3 Gm6415-201ENSMUST00000118488 348 ntBASIC16.24■□□□□ 0.19
Trim47Q8C0E3 Gm15693-201ENSMUST00000120470 637 ntBASIC16.24■□□□□ 0.19
Trim47Q8C0E3 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC16.24■□□□□ 0.19
Trim47Q8C0E3 Gm18766-201ENSMUST00000189811 808 ntBASIC16.24■□□□□ 0.19
Trim47Q8C0E3 Tmem86b-204ENSMUST00000206610 522 ntTSL 3 BASIC16.24■□□□□ 0.19
Trim47Q8C0E3 Gm44872-201ENSMUST00000207864 420 ntBASIC16.24■□□□□ 0.19
Trim47Q8C0E3 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim47Q8C0E3 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim47Q8C0E3 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim47Q8C0E3 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim47Q8C0E3 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
Trim47Q8C0E3 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Trim47Q8C0E3 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim47Q8C0E3 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trim47Q8C0E3 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Trim47Q8C0E3 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC16.23■□□□□ 0.19
Trim47Q8C0E3 Tmem199-201ENSMUST00000052566 1347 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trim47Q8C0E3 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trim47Q8C0E3 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC16.23■□□□□ 0.19
Trim47Q8C0E3 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
Trim47Q8C0E3 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trim47Q8C0E3 Isg20l2-201ENSMUST00000055984 2893 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trim47Q8C0E3 Tmem176b-203ENSMUST00000166247 1414 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trim47Q8C0E3 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trim47Q8C0E3 Zfp715-201ENSMUST00000012796 907 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Trim47Q8C0E3 Styxl1-207ENSMUST00000177559 1236 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
Trim47Q8C0E3 Gm37230-201ENSMUST00000194491 818 ntBASIC16.23■□□□□ 0.19
Trim47Q8C0E3 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC16.23■□□□□ 0.19
Trim47Q8C0E3 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Trim47Q8C0E3 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trim47Q8C0E3 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC16.23■□□□□ 0.19
Trim47Q8C0E3 Arxes2-201ENSMUST00000058119 1532 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
Trim47Q8C0E3 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Trim47Q8C0E3 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC16.23■□□□□ 0.19
Trim47Q8C0E3 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
Trim47Q8C0E3 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Trim47Q8C0E3 Sptlc2-201ENSMUST00000021424 6710 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trim47Q8C0E3 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim47Q8C0E3 Gxylt2-201ENSMUST00000032157 7658 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim47Q8C0E3 Tmod2-207ENSMUST00000215462 1564 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Trim47Q8C0E3 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim47Q8C0E3 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim47Q8C0E3 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim47Q8C0E3 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim47Q8C0E3 Cbl-201ENSMUST00000037644 4901 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim47Q8C0E3 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim47Q8C0E3 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim47Q8C0E3 H60b-201ENSMUST00000105522 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim47Q8C0E3 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
Trim47Q8C0E3 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC16.22■□□□□ 0.19
Trim47Q8C0E3 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim47Q8C0E3 Ccnh-202ENSMUST00000163600 1055 ntTSL 5 BASIC16.22■□□□□ 0.19
Trim47Q8C0E3 AA543401-201ENSMUST00000164248 1269 ntBASIC16.22■□□□□ 0.19
Trim47Q8C0E3 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
Trim47Q8C0E3 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
Trim47Q8C0E3 Gm27430-201ENSMUST00000184585 107 ntBASIC16.22■□□□□ 0.19
Trim47Q8C0E3 Gm38294-201ENSMUST00000192831 381 ntBASIC16.22■□□□□ 0.19
Trim47Q8C0E3 Gm44333-201ENSMUST00000197168 107 ntBASIC16.22■□□□□ 0.19
Trim47Q8C0E3 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
Trim47Q8C0E3 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 47.2 ms