Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Trub1Q8C0D0 Scrt1-201ENSMUST00000096365 4010 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trub1Q8C0D0 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trub1Q8C0D0 Adam10-201ENSMUST00000067880 4593 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trub1Q8C0D0 Vdac3-201ENSMUST00000009036 1354 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trub1Q8C0D0 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Trub1Q8C0D0 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trub1Q8C0D0 Gm44981-201ENSMUST00000205549 1943 ntBASIC15.12■□□□□ 0.01
Trub1Q8C0D0 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Trub1Q8C0D0 AC126250.1-201ENSMUST00000228343 1768 ntBASIC15.12■□□□□ 0.01
Trub1Q8C0D0 Gm14494-201ENSMUST00000118786 435 ntBASIC15.12■□□□□ 0.01
Trub1Q8C0D0 Gm15467-201ENSMUST00000120582 445 ntBASIC15.12■□□□□ 0.01
Trub1Q8C0D0 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
Trub1Q8C0D0 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
Trub1Q8C0D0 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC15.12■□□□□ 0.01
Trub1Q8C0D0 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
Trub1Q8C0D0 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC15.12■□□□□ 0.01
Trub1Q8C0D0 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trub1Q8C0D0 Gm32591-204ENSMUST00000208679 1806 ntTSL 5 BASIC15.12■□□□□ 0.01
Trub1Q8C0D0 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trub1Q8C0D0 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trub1Q8C0D0 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
Trub1Q8C0D0 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trub1Q8C0D0 Ubn1-201ENSMUST00000052449 6455 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trub1Q8C0D0 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trub1Q8C0D0 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC15.12■□□□□ 0.01
Trub1Q8C0D0 Gm14451-201ENSMUST00000121581 1542 ntBASIC15.12■□□□□ 0.01
Trub1Q8C0D0 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trub1Q8C0D0 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trub1Q8C0D0 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trub1Q8C0D0 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Trub1Q8C0D0 Gxylt2-201ENSMUST00000032157 7658 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trub1Q8C0D0 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Trub1Q8C0D0 Hectd2-201ENSMUST00000047247 4731 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trub1Q8C0D0 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trub1Q8C0D0 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trub1Q8C0D0 Gm43697-201ENSMUST00000199637 2581 ntBASIC15.11■□□□□ 0.01
Trub1Q8C0D0 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
Trub1Q8C0D0 Cblb-201ENSMUST00000114471 6648 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trub1Q8C0D0 Gpr135-201ENSMUST00000050649 3150 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Trub1Q8C0D0 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Trub1Q8C0D0 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trub1Q8C0D0 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trub1Q8C0D0 AC140354.1-201ENSMUST00000219499 2425 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Trub1Q8C0D0 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trub1Q8C0D0 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Trub1Q8C0D0 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Trub1Q8C0D0 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC15.11■□□□□ 0.01
Trub1Q8C0D0 Gm20553-201ENSMUST00000204205 844 ntBASIC15.11■□□□□ 0.01
Trub1Q8C0D0 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trub1Q8C0D0 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trub1Q8C0D0 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trub1Q8C0D0 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trub1Q8C0D0 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trub1Q8C0D0 Tle3-205ENSMUST00000159630 4065 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Trub1Q8C0D0 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trub1Q8C0D0 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Trub1Q8C0D0 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Trub1Q8C0D0 Gfod1-201ENSMUST00000055341 6928 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trub1Q8C0D0 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Trub1Q8C0D0 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC15.11■□□□□ 0.01
Trub1Q8C0D0 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trub1Q8C0D0 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trub1Q8C0D0 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Trub1Q8C0D0 Acadm-201ENSMUST00000072697 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trub1Q8C0D0 Stard5-201ENSMUST00000075418 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trub1Q8C0D0 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Trub1Q8C0D0 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Trub1Q8C0D0 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Trub1Q8C0D0 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trub1Q8C0D0 Dusp15-203ENSMUST00000123121 2993 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
Trub1Q8C0D0 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trub1Q8C0D0 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Trub1Q8C0D0 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Trub1Q8C0D0 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Trub1Q8C0D0 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trub1Q8C0D0 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trub1Q8C0D0 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Trub1Q8C0D0 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC15.1■□□□□ 0.01
Trub1Q8C0D0 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC15.1■□□□□ 0.01
Trub1Q8C0D0 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trub1Q8C0D0 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trub1Q8C0D0 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Trub1Q8C0D0 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Trub1Q8C0D0 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC15.1■□□□□ 0.01
Trub1Q8C0D0 CT030684.1-201ENSMUST00000227292 914 ntBASIC15.1■□□□□ 0.01
Trub1Q8C0D0 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trub1Q8C0D0 Gm10175-201ENSMUST00000086013 645 ntBASIC15.1■□□□□ 0.01
Trub1Q8C0D0 Gm45760-201ENSMUST00000212190 1782 ntBASIC15.1■□□□□ 0.01
Trub1Q8C0D0 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Trub1Q8C0D0 Dip2b-202ENSMUST00000100203 8914 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trub1Q8C0D0 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Trub1Q8C0D0 Kcnh4-201ENSMUST00000107361 3748 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Trub1Q8C0D0 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trub1Q8C0D0 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trub1Q8C0D0 Zscan22-204ENSMUST00000120809 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trub1Q8C0D0 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Trub1Q8C0D0 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trub1Q8C0D0 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trub1Q8C0D0 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 33.7 ms