Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Col28a1Q2UY11 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Col28a1Q2UY11 Terf1-201ENSMUST00000027057 1581 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Col28a1Q2UY11 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Col28a1Q2UY11 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col28a1Q2UY11 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Col28a1Q2UY11 AC157650.3-201ENSMUST00000225058 1476 ntBASIC14.25□□□□□ -0.13
Col28a1Q2UY11 Gm37240-203ENSMUST00000154148 2913 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col28a1Q2UY11 Pqlc2-205ENSMUST00000172747 1405 ntAPPRIS P2 TSL 5 BASIC14.25□□□□□ -0.13
Col28a1Q2UY11 Mto1-201ENSMUST00000034896 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col28a1Q2UY11 AC166574.6-201ENSMUST00000227889 1806 ntBASIC14.25□□□□□ -0.13
Col28a1Q2UY11 Gm38391-201ENSMUST00000191720 4069 ntBASIC14.25□□□□□ -0.13
Col28a1Q2UY11 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col28a1Q2UY11 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col28a1Q2UY11 Ctu2-201ENSMUST00000116412 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col28a1Q2UY11 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Col28a1Q2UY11 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col28a1Q2UY11 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col28a1Q2UY11 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Col28a1Q2UY11 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC14.25□□□□□ -0.13
Col28a1Q2UY11 Gm25745-201ENSMUST00000174945 133 ntBASIC14.25□□□□□ -0.13
Col28a1Q2UY11 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC14.25□□□□□ -0.13
Col28a1Q2UY11 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC14.25□□□□□ -0.13
Col28a1Q2UY11 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC14.25□□□□□ -0.13
Col28a1Q2UY11 Rbfox2-207ENSMUST00000227533 1041 ntBASIC14.25□□□□□ -0.13
Col28a1Q2UY11 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Col28a1Q2UY11 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC14.25□□□□□ -0.13
Col28a1Q2UY11 Wsb1-201ENSMUST00000017821 2476 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col28a1Q2UY11 Aim2-202ENSMUST00000147604 2839 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Col28a1Q2UY11 Retreg3-201ENSMUST00000017946 3165 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col28a1Q2UY11 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col28a1Q2UY11 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col28a1Q2UY11 Srsf10-202ENSMUST00000097844 3055 ntAPPRIS ALT1 TSL 2 BASIC14.25□□□□□ -0.13
Col28a1Q2UY11 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col28a1Q2UY11 Olfr683-202ENSMUST00000209879 3841 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Col28a1Q2UY11 Sgce-202ENSMUST00000090686 1547 ntTSL 5 BASIC14.25□□□□□ -0.13
Col28a1Q2UY11 Map3k9-202ENSMUST00000222322 3303 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Col28a1Q2UY11 Btbd10-201ENSMUST00000047091 2581 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col28a1Q2UY11 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col28a1Q2UY11 Tuft1-203ENSMUST00000196655 2156 ntTSL 5 BASIC14.24□□□□□ -0.13
Col28a1Q2UY11 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col28a1Q2UY11 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Col28a1Q2UY11 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Col28a1Q2UY11 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Col28a1Q2UY11 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col28a1Q2UY11 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col28a1Q2UY11 H13-202ENSMUST00000089059 1743 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Col28a1Q2UY11 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Col28a1Q2UY11 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Col28a1Q2UY11 Rtkn-202ENSMUST00000087938 3080 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col28a1Q2UY11 Lman2-201ENSMUST00000021940 4315 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col28a1Q2UY11 Eaf1-201ENSMUST00000022446 4918 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col28a1Q2UY11 Scp2-201ENSMUST00000030340 2640 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col28a1Q2UY11 Ppip5k2-201ENSMUST00000042509 5882 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col28a1Q2UY11 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Col28a1Q2UY11 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
Col28a1Q2UY11 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Col28a1Q2UY11 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
Col28a1Q2UY11 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Col28a1Q2UY11 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC14.24□□□□□ -0.13
Col28a1Q2UY11 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC14.24□□□□□ -0.13
Col28a1Q2UY11 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Col28a1Q2UY11 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col28a1Q2UY11 Gm27702-201ENSMUST00000184512 56 ntBASIC14.24□□□□□ -0.13
Col28a1Q2UY11 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col28a1Q2UY11 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col28a1Q2UY11 Ccdc182-201ENSMUST00000037268 1204 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Col28a1Q2UY11 Aqp12-201ENSMUST00000059676 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col28a1Q2UY11 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Col28a1Q2UY11 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col28a1Q2UY11 Mrap2-202ENSMUST00000113149 2112 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Col28a1Q2UY11 Gm37019-201ENSMUST00000192133 2134 ntBASIC14.24□□□□□ -0.13
Col28a1Q2UY11 Piezo1-209ENSMUST00000156333 8219 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col28a1Q2UY11 Piezo1-201ENSMUST00000067252 8216 ntAPPRIS P2 TSL 5 BASIC14.24□□□□□ -0.13
Col28a1Q2UY11 Ptprn2-201ENSMUST00000070733 3201 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col28a1Q2UY11 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col28a1Q2UY11 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col28a1Q2UY11 Zfp868-202ENSMUST00000121886 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col28a1Q2UY11 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col28a1Q2UY11 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Col28a1Q2UY11 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col28a1Q2UY11 Kif7-204ENSMUST00000184137 4093 ntAPPRIS P3 TSL 5 BASIC14.23□□□□□ -0.13
Col28a1Q2UY11 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col28a1Q2UY11 Slc39a11-202ENSMUST00000071539 2664 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col28a1Q2UY11 Prkcb-202ENSMUST00000064989 2911 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col28a1Q2UY11 Eif4ebp2-201ENSMUST00000020288 5784 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col28a1Q2UY11 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col28a1Q2UY11 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col28a1Q2UY11 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col28a1Q2UY11 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col28a1Q2UY11 Gm15467-201ENSMUST00000120582 445 ntBASIC14.23□□□□□ -0.13
Col28a1Q2UY11 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC14.23□□□□□ -0.13
Col28a1Q2UY11 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC14.23□□□□□ -0.13
Col28a1Q2UY11 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col28a1Q2UY11 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC14.23□□□□□ -0.13
Col28a1Q2UY11 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC14.23□□□□□ -0.13
Col28a1Q2UY11 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC14.23□□□□□ -0.13
Col28a1Q2UY11 Psmb5-202ENSMUST00000227257 622 ntBASIC14.23□□□□□ -0.13
Col28a1Q2UY11 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col28a1Q2UY11 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 26.2 ms