Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Ccdc9Q8VC31 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ccdc9Q8VC31 Tmem131l-202ENSMUST00000191758 5555 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ccdc9Q8VC31 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ccdc9Q8VC31 Metap2-206ENSMUST00000180840 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ccdc9Q8VC31 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ccdc9Q8VC31 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Ccdc9Q8VC31 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ccdc9Q8VC31 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Ccdc9Q8VC31 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Ccdc9Q8VC31 Gsdmd-201ENSMUST00000023238 1776 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Ccdc9Q8VC31 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Ccdc9Q8VC31 Nub1-202ENSMUST00000197407 3546 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Ccdc9Q8VC31 Tacc3-202ENSMUST00000079534 2899 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Ccdc9Q8VC31 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Ccdc9Q8VC31 Tlr9-201ENSMUST00000062241 3478 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Ccdc9Q8VC31 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Ccdc9Q8VC31 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC17.71■□□□□ 0.43
Ccdc9Q8VC31 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Ccdc9Q8VC31 Me1-201ENSMUST00000034989 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Ccdc9Q8VC31 Rgs12-205ENSMUST00000114283 2628 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Ccdc9Q8VC31 Coq4-201ENSMUST00000028137 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Ccdc9Q8VC31 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Ccdc9Q8VC31 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Ccdc9Q8VC31 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Ccdc9Q8VC31 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Ccdc9Q8VC31 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.42
Ccdc9Q8VC31 Ggt7-201ENSMUST00000029131 2614 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ccdc9Q8VC31 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ccdc9Q8VC31 Nrp2-204ENSMUST00000102822 6708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ccdc9Q8VC31 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Ccdc9Q8VC31 Fzd1-201ENSMUST00000054294 4197 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Ccdc9Q8VC31 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Ccdc9Q8VC31 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ccdc9Q8VC31 Pelp1-201ENSMUST00000019065 3435 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ccdc9Q8VC31 Cacna1g-209ENSMUST00000107791 8002 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Ccdc9Q8VC31 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ccdc9Q8VC31 Rbak-201ENSMUST00000049861 3335 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ccdc9Q8VC31 Tpgs2-201ENSMUST00000115817 4159 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ccdc9Q8VC31 Gucy2e-202ENSMUST00000108664 4415 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Ccdc9Q8VC31 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC17.7■□□□□ 0.42
Ccdc9Q8VC31 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC17.7■□□□□ 0.42
Ccdc9Q8VC31 Gm18958-201ENSMUST00000174258 762 ntBASIC17.7■□□□□ 0.42
Ccdc9Q8VC31 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Ccdc9Q8VC31 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Ccdc9Q8VC31 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ccdc9Q8VC31 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ccdc9Q8VC31 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ccdc9Q8VC31 Larp4b-202ENSMUST00000188211 5610 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ccdc9Q8VC31 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Ccdc9Q8VC31 Olfr71-202ENSMUST00000107862 2587 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
Ccdc9Q8VC31 Arhgef1-202ENSMUST00000098683 3375 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ccdc9Q8VC31 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC17.69■□□□□ 0.42
Ccdc9Q8VC31 Igsf9b-202ENSMUST00000133213 4239 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
Ccdc9Q8VC31 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ccdc9Q8VC31 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Ccdc9Q8VC31 Dhx58-201ENSMUST00000017974 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ccdc9Q8VC31 Ube3a-216ENSMUST00000202945 3889 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Ccdc9Q8VC31 Dnpep-203ENSMUST00000185419 2833 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Ccdc9Q8VC31 C77080-203ENSMUST00000106051 5049 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ccdc9Q8VC31 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ccdc9Q8VC31 C77080-202ENSMUST00000097873 5033 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ccdc9Q8VC31 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC17.69■□□□□ 0.42
Ccdc9Q8VC31 Rbm33-201ENSMUST00000030920 3955 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Ccdc9Q8VC31 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ccdc9Q8VC31 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ccdc9Q8VC31 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ccdc9Q8VC31 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC17.69■□□□□ 0.42
Ccdc9Q8VC31 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ccdc9Q8VC31 Klhl15-201ENSMUST00000096369 3944 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Ccdc9Q8VC31 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC17.69■□□□□ 0.42
Ccdc9Q8VC31 Unc119b-201ENSMUST00000060798 3659 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ccdc9Q8VC31 Rnf10-201ENSMUST00000040555 3106 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ccdc9Q8VC31 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ccdc9Q8VC31 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Ccdc9Q8VC31 Pigh-201ENSMUST00000072154 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ccdc9Q8VC31 Gm2895-201ENSMUST00000171591 3194 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Ccdc9Q8VC31 Fam13b-201ENSMUST00000040506 3343 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ccdc9Q8VC31 Dmtn-208ENSMUST00000228009 2643 ntAPPRIS P2 BASIC17.68■□□□□ 0.42
Ccdc9Q8VC31 Gm16582-201ENSMUST00000159627 1930 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Ccdc9Q8VC31 Ccpg1-208ENSMUST00000150826 2939 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ccdc9Q8VC31 Colgalt2-201ENSMUST00000044311 4093 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ccdc9Q8VC31 Dpp6-201ENSMUST00000071500 3826 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ccdc9Q8VC31 Rnf10-202ENSMUST00000112096 3112 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ccdc9Q8VC31 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Ccdc9Q8VC31 Ptpru-203ENSMUST00000105987 5484 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Ccdc9Q8VC31 Ahcyl2-205ENSMUST00000125911 2039 ntTSL 5 BASIC17.68■□□□□ 0.42
Ccdc9Q8VC31 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC17.68■□□□□ 0.42
Ccdc9Q8VC31 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC17.68■□□□□ 0.42
Ccdc9Q8VC31 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC17.68■□□□□ 0.42
Ccdc9Q8VC31 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC17.68■□□□□ 0.42
Ccdc9Q8VC31 Gm10252-201ENSMUST00000209541 832 ntBASIC17.68■□□□□ 0.42
Ccdc9Q8VC31 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ccdc9Q8VC31 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ccdc9Q8VC31 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ccdc9Q8VC31 Gm18263-201ENSMUST00000220846 1928 ntBASIC17.68■□□□□ 0.42
Ccdc9Q8VC31 Kcnq2-207ENSMUST00000103050 2713 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Ccdc9Q8VC31 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC17.68■□□□□ 0.42
Ccdc9Q8VC31 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC17.68■□□□□ 0.42
Ccdc9Q8VC31 Ces2e-202ENSMUST00000109410 1999 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 29 ms