Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trim56Q80VI1 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC17.33■□□□□ 0.36
Trim56Q80VI1 Gm16796-201ENSMUST00000126086 3172 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Trim56Q80VI1 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim56Q80VI1 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim56Q80VI1 Tbc1d16-203ENSMUST00000207655 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim56Q80VI1 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim56Q80VI1 Gm45133-201ENSMUST00000207548 2773 ntBASIC17.32■□□□□ 0.36
Trim56Q80VI1 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
Trim56Q80VI1 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim56Q80VI1 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Trim56Q80VI1 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC17.32■□□□□ 0.36
Trim56Q80VI1 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim56Q80VI1 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim56Q80VI1 Ccnh-202ENSMUST00000163600 1055 ntTSL 5 BASIC17.32■□□□□ 0.36
Trim56Q80VI1 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim56Q80VI1 Gm24158-201ENSMUST00000175263 71 ntBASIC17.32■□□□□ 0.36
Trim56Q80VI1 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC17.32■□□□□ 0.36
Trim56Q80VI1 Gm10253-201ENSMUST00000194270 940 ntBASIC17.32■□□□□ 0.36
Trim56Q80VI1 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim56Q80VI1 Gm5771-201ENSMUST00000049079 798 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim56Q80VI1 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC17.32■□□□□ 0.36
Trim56Q80VI1 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Trim56Q80VI1 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Trim56Q80VI1 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim56Q80VI1 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim56Q80VI1 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim56Q80VI1 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim56Q80VI1 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim56Q80VI1 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim56Q80VI1 Ttc22-201ENSMUST00000047922 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim56Q80VI1 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim56Q80VI1 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Trim56Q80VI1 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Trim56Q80VI1 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Trim56Q80VI1 Cldn14-204ENSMUST00000169391 1456 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
Trim56Q80VI1 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim56Q80VI1 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim56Q80VI1 Micall1-201ENSMUST00000040320 6701 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim56Q80VI1 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim56Q80VI1 A530083I20Rik-203ENSMUST00000214426 1855 ntTSL 5 BASIC17.31■□□□□ 0.36
Trim56Q80VI1 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim56Q80VI1 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim56Q80VI1 Ppp2r5b-201ENSMUST00000025695 2742 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim56Q80VI1 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim56Q80VI1 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Trim56Q80VI1 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Trim56Q80VI1 Ropn1l-201ENSMUST00000110408 957 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim56Q80VI1 Gm13883-202ENSMUST00000151310 1156 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Trim56Q80VI1 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Trim56Q80VI1 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC17.31■□□□□ 0.36
Trim56Q80VI1 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC17.31■□□□□ 0.36
Trim56Q80VI1 Wdr70-201ENSMUST00000045766 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim56Q80VI1 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Trim56Q80VI1 Acadm-201ENSMUST00000072697 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim56Q80VI1 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim56Q80VI1 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim56Q80VI1 Iqcj-201ENSMUST00000063263 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim56Q80VI1 Padi4-201ENSMUST00000026381 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim56Q80VI1 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Trim56Q80VI1 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim56Q80VI1 Arxes2-201ENSMUST00000058119 1532 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Trim56Q80VI1 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Trim56Q80VI1 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Trim56Q80VI1 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim56Q80VI1 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim56Q80VI1 9130024F11Rik-202ENSMUST00000185204 2628 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Trim56Q80VI1 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim56Q80VI1 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Trim56Q80VI1 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Trim56Q80VI1 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim56Q80VI1 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim56Q80VI1 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim56Q80VI1 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
Trim56Q80VI1 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim56Q80VI1 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim56Q80VI1 Fgf17-202ENSMUST00000227123 1336 ntBASIC17.3■□□□□ 0.36
Trim56Q80VI1 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Trim56Q80VI1 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim56Q80VI1 Abhd11-202ENSMUST00000111216 972 ntTSL 3 BASIC17.3■□□□□ 0.36
Trim56Q80VI1 Gm9824-201ENSMUST00000178707 561 ntBASIC17.3■□□□□ 0.36
Trim56Q80VI1 Gm26771-201ENSMUST00000180472 1082 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Trim56Q80VI1 Gm18766-201ENSMUST00000189811 808 ntBASIC17.3■□□□□ 0.36
Trim56Q80VI1 Gm37171-201ENSMUST00000192636 1185 ntBASIC17.3■□□□□ 0.36
Trim56Q80VI1 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Trim56Q80VI1 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Trim56Q80VI1 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim56Q80VI1 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim56Q80VI1 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim56Q80VI1 Plxdc2-203ENSMUST00000114703 2061 ntTSL 5 BASIC17.3■□□□□ 0.36
Trim56Q80VI1 B3gnt8-201ENSMUST00000076034 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim56Q80VI1 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim56Q80VI1 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trim56Q80VI1 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim56Q80VI1 Prkcd-207ENSMUST00000112210 2777 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim56Q80VI1 Ftcd-201ENSMUST00000001183 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim56Q80VI1 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim56Q80VI1 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trim56Q80VI1 Dyx1c1-202ENSMUST00000098567 1612 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Trim56Q80VI1 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 45.5 ms