Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col11a1Q61245 Dnase2a-206ENSMUST00000145292 678 ntTSL 5 BASIC16.16■□□□□ 0.18
Col11a1Q61245 Drap1-210ENSMUST00000148219 727 ntTSL 3 BASIC16.16■□□□□ 0.18
Col11a1Q61245 Gm22331-201ENSMUST00000158066 136 ntBASIC16.16■□□□□ 0.18
Col11a1Q61245 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col11a1Q61245 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col11a1Q61245 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col11a1Q61245 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col11a1Q61245 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col11a1Q61245 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
Col11a1Q61245 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Col11a1Q61245 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col11a1Q61245 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col11a1Q61245 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col11a1Q61245 Txn2-202ENSMUST00000100486 676 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Col11a1Q61245 A330102I10Rik-202ENSMUST00000140415 682 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Col11a1Q61245 Cmc4-203ENSMUST00000149863 507 ntAPPRIS P1 TSL 3 BASIC16.15■□□□□ 0.18
Col11a1Q61245 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col11a1Q61245 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC16.15■□□□□ 0.18
Col11a1Q61245 Mhrt-201ENSMUST00000181782 828 ntTSL 2 BASIC16.15■□□□□ 0.18
Col11a1Q61245 1700065I16Rik-202ENSMUST00000185477 813 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Col11a1Q61245 Gm28511-201ENSMUST00000191594 450 ntTSL 3 BASIC16.15■□□□□ 0.18
Col11a1Q61245 1600017P15Rik-202ENSMUST00000193960 890 ntBASIC16.15■□□□□ 0.18
Col11a1Q61245 Crip2-206ENSMUST00000200380 864 ntTSL 3 BASIC16.15■□□□□ 0.18
Col11a1Q61245 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC16.15■□□□□ 0.18
Col11a1Q61245 Spc24-204ENSMUST00000216057 627 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Col11a1Q61245 Hadhb-201ENSMUST00000026841 2033 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col11a1Q61245 Wdr83-201ENSMUST00000093357 1238 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col11a1Q61245 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
Col11a1Q61245 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Col11a1Q61245 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col11a1Q61245 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col11a1Q61245 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col11a1Q61245 AC153938.1-201ENSMUST00000220354 1425 ntTSL 5 BASIC16.15■□□□□ 0.18
Col11a1Q61245 Arl5c-202ENSMUST00000107563 823 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Col11a1Q61245 Pkig-203ENSMUST00000109400 1059 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col11a1Q61245 Arpc3-203ENSMUST00000111713 708 ntTSL 3 BASIC16.15■□□□□ 0.18
Col11a1Q61245 Gm6152-201ENSMUST00000151704 340 ntBASIC16.15■□□□□ 0.18
Col11a1Q61245 Ube2m-208ENSMUST00000165394 1228 ntTSL 5 BASIC16.15■□□□□ 0.18
Col11a1Q61245 Gm43403-202ENSMUST00000198830 370 ntTSL 3 BASIC16.15■□□□□ 0.18
Col11a1Q61245 Rpl10-201ENSMUST00000008826 799 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col11a1Q61245 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col11a1Q61245 Bin2-205ENSMUST00000182814 1901 ntTSL 5 BASIC16.14■□□□□ 0.18
Col11a1Q61245 Gm13075-202ENSMUST00000149247 1621 ntTSL 5 BASIC16.14■□□□□ 0.17
Col11a1Q61245 H13-202ENSMUST00000089059 1743 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Col11a1Q61245 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col11a1Q61245 Mageb10-ps-201ENSMUST00000119697 1407 ntBASIC16.14■□□□□ 0.17
Col11a1Q61245 Prss47-204ENSMUST00000222769 1406 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
Col11a1Q61245 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col11a1Q61245 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col11a1Q61245 Sostdc1-201ENSMUST00000041407 1781 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col11a1Q61245 Gm13350-201ENSMUST00000120519 479 ntBASIC16.14■□□□□ 0.17
Col11a1Q61245 Gm16282-201ENSMUST00000162641 451 ntTSL 3 BASIC16.14■□□□□ 0.17
Col11a1Q61245 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Col11a1Q61245 Gm37714-201ENSMUST00000194742 342 ntBASIC16.14■□□□□ 0.17
Col11a1Q61245 Ins2-209ENSMUST00000210288 918 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
Col11a1Q61245 Gm36634-201ENSMUST00000218356 1259 ntTSL 3 BASIC16.14■□□□□ 0.17
Col11a1Q61245 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col11a1Q61245 Gemin7-201ENSMUST00000051364 763 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col11a1Q61245 Gm12166-201ENSMUST00000093169 958 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
Col11a1Q61245 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col11a1Q61245 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col11a1Q61245 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col11a1Q61245 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
Col11a1Q61245 Cenpt-201ENSMUST00000040776 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col11a1Q61245 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col11a1Q61245 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col11a1Q61245 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col11a1Q61245 AC093043.3-201ENSMUST00000226531 2273 ntBASIC16.14■□□□□ 0.17
Col11a1Q61245 Acadm-201ENSMUST00000072697 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col11a1Q61245 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col11a1Q61245 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col11a1Q61245 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Col11a1Q61245 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col11a1Q61245 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
Col11a1Q61245 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col11a1Q61245 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col11a1Q61245 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC16.13■□□□□ 0.17
Col11a1Q61245 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
Col11a1Q61245 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col11a1Q61245 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col11a1Q61245 Spatc1l-202ENSMUST00000105414 1060 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Col11a1Q61245 Gm33474-201ENSMUST00000199486 1231 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Col11a1Q61245 Gm4971-201ENSMUST00000205991 1108 ntBASIC16.13■□□□□ 0.17
Col11a1Q61245 CU024892.2-201ENSMUST00000224608 832 ntBASIC16.13■□□□□ 0.17
Col11a1Q61245 Txn2-201ENSMUST00000005487 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col11a1Q61245 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Col11a1Q61245 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
Col11a1Q61245 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col11a1Q61245 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col11a1Q61245 Dlg4-204ENSMUST00000108589 3271 ntTSL 5 BASIC16.13■□□□□ 0.17
Col11a1Q61245 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC16.13■□□□□ 0.17
Col11a1Q61245 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col11a1Q61245 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC16.13■□□□□ 0.17
Col11a1Q61245 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col11a1Q61245 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC16.13■□□□□ 0.17
Col11a1Q61245 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col11a1Q61245 Gm13385-201ENSMUST00000121089 220 ntBASIC16.12■□□□□ 0.17
Col11a1Q61245 Gm29417-201ENSMUST00000188160 571 ntTSL 5 BASIC16.12■□□□□ 0.17
Col11a1Q61245 AC166997.1-201ENSMUST00000225122 572 ntBASIC16.12■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 46.2 ms