Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm24513-201ENSMUST00000174964 138 ntBASIC15.73■□□□□ 0.11
Upf3bQ3ULL6 Gm27397-201ENSMUST00000184997 107 ntBASIC15.73■□□□□ 0.11
Upf3bQ3ULL6 9430081H08Rik-201ENSMUST00000217460 818 ntBASIC15.73■□□□□ 0.11
Upf3bQ3ULL6 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Upf3bQ3ULL6 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Upf3bQ3ULL6 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Upf3bQ3ULL6 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Upf3bQ3ULL6 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Upf3bQ3ULL6 Tle3-205ENSMUST00000159630 4065 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Upf3bQ3ULL6 Zufsp-205ENSMUST00000218880 2005 ntTSL 5 BASIC15.73■□□□□ 0.11
Upf3bQ3ULL6 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Upf3bQ3ULL6 Ldlrap1-201ENSMUST00000037828 6549 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Upf3bQ3ULL6 Garem2-201ENSMUST00000058045 3865 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
Upf3bQ3ULL6 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Upf3bQ3ULL6 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Upf3bQ3ULL6 Gm12522-201ENSMUST00000142833 2439 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Upf3bQ3ULL6 Gm42632-201ENSMUST00000201707 2411 ntBASIC15.73■□□□□ 0.11
Upf3bQ3ULL6 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC15.73■□□□□ 0.11
Upf3bQ3ULL6 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Upf3bQ3ULL6 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Upf3bQ3ULL6 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
Upf3bQ3ULL6 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC15.72■□□□□ 0.11
Upf3bQ3ULL6 Gm10676-201ENSMUST00000098778 3221 ntBASIC15.72■□□□□ 0.11
Upf3bQ3ULL6 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Upf3bQ3ULL6 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
Upf3bQ3ULL6 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
Upf3bQ3ULL6 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Upf3bQ3ULL6 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Upf3bQ3ULL6 Gm8749-201ENSMUST00000117737 331 ntBASIC15.72■□□□□ 0.11
Upf3bQ3ULL6 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC15.72■□□□□ 0.11
Upf3bQ3ULL6 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC15.72■□□□□ 0.11
Upf3bQ3ULL6 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
Upf3bQ3ULL6 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC15.72■□□□□ 0.11
Upf3bQ3ULL6 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC15.72■□□□□ 0.11
Upf3bQ3ULL6 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC15.72■□□□□ 0.11
Upf3bQ3ULL6 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Upf3bQ3ULL6 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
Upf3bQ3ULL6 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Upf3bQ3ULL6 Ppp1r15b-201ENSMUST00000052529 5594 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Upf3bQ3ULL6 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Upf3bQ3ULL6 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Upf3bQ3ULL6 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
Upf3bQ3ULL6 2010007H06Rik-202ENSMUST00000186025 4934 ntTSL 2 BASIC15.72■□□□□ 0.11
Upf3bQ3ULL6 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Upf3bQ3ULL6 Arl5b-202ENSMUST00000069870 6981 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Upf3bQ3ULL6 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC15.72■□□□□ 0.11
Upf3bQ3ULL6 AC126250.1-201ENSMUST00000228343 1768 ntBASIC15.72■□□□□ 0.11
Upf3bQ3ULL6 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC15.72■□□□□ 0.11
Upf3bQ3ULL6 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Upf3bQ3ULL6 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Upf3bQ3ULL6 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Upf3bQ3ULL6 BC005537-201ENSMUST00000019276 5849 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Upf3bQ3ULL6 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
Upf3bQ3ULL6 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Upf3bQ3ULL6 2810474O19Rik-202ENSMUST00000100765 5356 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Upf3bQ3ULL6 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Upf3bQ3ULL6 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Upf3bQ3ULL6 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Upf3bQ3ULL6 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC15.71■□□□□ 0.11
Upf3bQ3ULL6 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
Upf3bQ3ULL6 Gm5648-201ENSMUST00000122244 1587 ntBASIC15.71■□□□□ 0.11
Upf3bQ3ULL6 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Upf3bQ3ULL6 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
Upf3bQ3ULL6 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Upf3bQ3ULL6 Sesn3-201ENSMUST00000034507 1827 ntTSL 5 BASIC15.71■□□□□ 0.11
Upf3bQ3ULL6 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Upf3bQ3ULL6 Gm2109-201ENSMUST00000189326 1409 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Upf3bQ3ULL6 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC15.71■□□□□ 0.11
Upf3bQ3ULL6 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC15.71■□□□□ 0.11
Upf3bQ3ULL6 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC15.71■□□□□ 0.11
Upf3bQ3ULL6 Gm15483-201ENSMUST00000120338 456 ntBASIC15.71■□□□□ 0.11
Upf3bQ3ULL6 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Upf3bQ3ULL6 Gm37935-201ENSMUST00000192012 982 ntBASIC15.71■□□□□ 0.11
Upf3bQ3ULL6 Msantd1-204ENSMUST00000212362 798 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
Upf3bQ3ULL6 AC155252.2-201ENSMUST00000226946 680 ntBASIC15.71■□□□□ 0.11
Upf3bQ3ULL6 Gtpbp10-201ENSMUST00000088842 941 ntTSL 5 BASIC15.71■□□□□ 0.11
Upf3bQ3ULL6 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
Upf3bQ3ULL6 Adam10-201ENSMUST00000067880 4593 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Upf3bQ3ULL6 Tcf21-202ENSMUST00000218002 1788 ntBASIC15.71■□□□□ 0.11
Upf3bQ3ULL6 Cox16-201ENSMUST00000002757 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Upf3bQ3ULL6 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Upf3bQ3ULL6 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC15.71■□□□□ 0.11
Upf3bQ3ULL6 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC15.71■□□□□ 0.11
Upf3bQ3ULL6 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
Upf3bQ3ULL6 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Upf3bQ3ULL6 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Upf3bQ3ULL6 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Upf3bQ3ULL6 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Upf3bQ3ULL6 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Upf3bQ3ULL6 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Upf3bQ3ULL6 Cyp4f37-201ENSMUST00000077639 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Upf3bQ3ULL6 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Upf3bQ3ULL6 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Upf3bQ3ULL6 Gm10605-202ENSMUST00000183019 3198 ntBASIC15.7■□□□□ 0.1
Upf3bQ3ULL6 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
Upf3bQ3ULL6 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Upf3bQ3ULL6 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Upf3bQ3ULL6 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Upf3bQ3ULL6 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
Upf3bQ3ULL6 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 75.9 ms