Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Scgb3a2-201ENSMUST00000043803 842 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Scn11aQ9R053 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scn11aQ9R053 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Scn11aQ9R053 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Scn11aQ9R053 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Scn11aQ9R053 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Scn11aQ9R053 Gm4981-201ENSMUST00000099726 1854 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Scn11aQ9R053 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Scn11aQ9R053 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Scn11aQ9R053 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Scn11aQ9R053 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC17.21■□□□□ 0.35
Scn11aQ9R053 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Scn11aQ9R053 4921513I03Rik-201ENSMUST00000056994 1534 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Scn11aQ9R053 Prok2-202ENSMUST00000032152 1423 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Scn11aQ9R053 Gm5303-201ENSMUST00000117943 1252 ntBASIC17.21■□□□□ 0.35
Scn11aQ9R053 Gm15957-201ENSMUST00000118893 974 ntBASIC17.21■□□□□ 0.35
Scn11aQ9R053 Gm42420-201ENSMUST00000126621 634 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
Scn11aQ9R053 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC17.21■□□□□ 0.35
Scn11aQ9R053 Ighv1-25-201ENSMUST00000195638 345 ntBASIC17.21■□□□□ 0.35
Scn11aQ9R053 AC154806.6-201ENSMUST00000228192 202 ntBASIC17.21■□□□□ 0.35
Scn11aQ9R053 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Scn11aQ9R053 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Scn11aQ9R053 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Scn11aQ9R053 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Scn11aQ9R053 Map3k8-201ENSMUST00000025078 2507 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Scn11aQ9R053 Psrc1-202ENSMUST00000102629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Scn11aQ9R053 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Scn11aQ9R053 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.34
Scn11aQ9R053 Gm14451-201ENSMUST00000121581 1542 ntBASIC17.21■□□□□ 0.34
Scn11aQ9R053 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
Scn11aQ9R053 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.34
Scn11aQ9R053 4930481A15Rik-201ENSMUST00000128542 2106 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
Scn11aQ9R053 Pxn-213ENSMUST00000202564 2126 ntTSL 5 BASIC17.21■□□□□ 0.34
Scn11aQ9R053 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Scn11aQ9R053 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Scn11aQ9R053 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Scn11aQ9R053 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Scn11aQ9R053 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Scn11aQ9R053 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Scn11aQ9R053 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Scn11aQ9R053 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Scn11aQ9R053 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Scn11aQ9R053 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC17.2■□□□□ 0.34
Scn11aQ9R053 Ins2-209ENSMUST00000210288 918 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Scn11aQ9R053 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Scn11aQ9R053 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Scn11aQ9R053 Olfr1156-203ENSMUST00000216726 3271 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Scn11aQ9R053 Ddb2-201ENSMUST00000028696 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Scn11aQ9R053 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Scn11aQ9R053 Dok7-201ENSMUST00000050709 2498 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Scn11aQ9R053 Myg1-202ENSMUST00000113682 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Scn11aQ9R053 Fam131a-201ENSMUST00000056518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Scn11aQ9R053 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Scn11aQ9R053 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Scn11aQ9R053 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Scn11aQ9R053 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Scn11aQ9R053 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC17.2■□□□□ 0.34
Scn11aQ9R053 Mir1247-201ENSMUST00000116706 82 ntBASIC17.2■□□□□ 0.34
Scn11aQ9R053 Gm15393-201ENSMUST00000120499 219 ntBASIC17.2■□□□□ 0.34
Scn11aQ9R053 Mir3547-201ENSMUST00000175461 88 ntBASIC17.2■□□□□ 0.34
Scn11aQ9R053 Gm44756-201ENSMUST00000206172 1069 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Scn11aQ9R053 Emc4-201ENSMUST00000028551 983 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Scn11aQ9R053 Krtap6-5-201ENSMUST00000074637 600 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Scn11aQ9R053 Pcgf1-201ENSMUST00000092614 866 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Scn11aQ9R053 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Scn11aQ9R053 Slc22a20-201ENSMUST00000041827 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Scn11aQ9R053 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC17.19■□□□□ 0.34
Scn11aQ9R053 Cd1d1-202ENSMUST00000063869 1421 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Scn11aQ9R053 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Scn11aQ9R053 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Scn11aQ9R053 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC17.19■□□□□ 0.34
Scn11aQ9R053 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC17.19■□□□□ 0.34
Scn11aQ9R053 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC17.19■□□□□ 0.34
Scn11aQ9R053 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC17.19■□□□□ 0.34
Scn11aQ9R053 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Scn11aQ9R053 Gm11918-201ENSMUST00000121660 179 ntBASIC17.19■□□□□ 0.34
Scn11aQ9R053 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC17.19■□□□□ 0.34
Scn11aQ9R053 Arrdc5-201ENSMUST00000097303 1054 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Scn11aQ9R053 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC17.19■□□□□ 0.34
Scn11aQ9R053 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Scn11aQ9R053 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC17.19■□□□□ 0.34
Scn11aQ9R053 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
Scn11aQ9R053 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Scn11aQ9R053 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Scn11aQ9R053 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
Scn11aQ9R053 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Scn11aQ9R053 Gm36445-201ENSMUST00000209344 1432 ntTSL 5 BASIC17.19■□□□□ 0.34
Scn11aQ9R053 Wisp3-201ENSMUST00000076713 1419 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
Scn11aQ9R053 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Scn11aQ9R053 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Scn11aQ9R053 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Scn11aQ9R053 Pdlim3-201ENSMUST00000034053 1604 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Scn11aQ9R053 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Scn11aQ9R053 Smim5-201ENSMUST00000131566 700 ntTSL 2 BASIC17.18■□□□□ 0.34
Scn11aQ9R053 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
Scn11aQ9R053 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
Scn11aQ9R053 Gm31326-201ENSMUST00000191856 1048 ntBASIC17.18■□□□□ 0.34
Scn11aQ9R053 Nupr1-201ENSMUST00000032961 829 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Scn11aQ9R053 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Scn11aQ9R053 Mettl3-201ENSMUST00000022767 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 26.7 ms