Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC26.31■■□□□ 1.8
SENP3Q9H4L4 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC26.31■■□□□ 1.8
SENP3Q9H4L4 AC090912.3-201ENST00000609775 533 ntBASIC26.31■■□□□ 1.8
SENP3Q9H4L4 AC006328.2-201ENST00000623198 397 ntBASIC26.31■■□□□ 1.8
SENP3Q9H4L4 AC012005.2-201ENST00000624333 397 ntBASIC26.31■■□□□ 1.8
SENP3Q9H4L4 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
SENP3Q9H4L4 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
SENP3Q9H4L4 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
SENP3Q9H4L4 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC26.31■■□□□ 1.8
SENP3Q9H4L4 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC26.31■■□□□ 1.8
SENP3Q9H4L4 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC26.3■■□□□ 1.8
SENP3Q9H4L4 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC26.3■■□□□ 1.8
SENP3Q9H4L4 UBQLN4P1-201ENST00000461599 1801 ntBASIC26.3■■□□□ 1.8
SENP3Q9H4L4 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
SENP3Q9H4L4 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC26.3■■□□□ 1.8
SENP3Q9H4L4 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC26.3■■□□□ 1.8
SENP3Q9H4L4 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC26.3■■□□□ 1.8
SENP3Q9H4L4 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC26.3■■□□□ 1.8
SENP3Q9H4L4 SETD4-203ENST00000399205 1208 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
SENP3Q9H4L4 LIPT1P1-201ENST00000415870 1186 ntBASIC26.3■■□□□ 1.8
SENP3Q9H4L4 UPF3AP3-201ENST00000420996 769 ntBASIC26.3■■□□□ 1.8
SENP3Q9H4L4 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC26.3■■□□□ 1.8
SENP3Q9H4L4 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC26.3■■□□□ 1.8
SENP3Q9H4L4 PRELID3BP10-201ENST00000431957 584 ntBASIC26.3■■□□□ 1.8
SENP3Q9H4L4 LINC01995-201ENST00000489016 621 ntTSL 3 BASIC26.3■■□□□ 1.8
SENP3Q9H4L4 BLNK-209ENST00000495266 440 ntTSL 5 BASIC26.3■■□□□ 1.8
SENP3Q9H4L4 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC26.3■■□□□ 1.8
SENP3Q9H4L4 DHDH-204ENST00000523250 634 ntTSL 5 BASIC26.3■■□□□ 1.8
SENP3Q9H4L4 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC26.3■■□□□ 1.8
SENP3Q9H4L4 SART3-203ENST00000546611 1184 ntBASIC26.3■■□□□ 1.8
SENP3Q9H4L4 CXXC1P1-203ENST00000589302 746 ntTSL 3 BASIC26.3■■□□□ 1.8
SENP3Q9H4L4 RPS15-207ENST00000591032 550 ntTSL 3 BASIC26.3■■□□□ 1.8
SENP3Q9H4L4 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC26.3■■□□□ 1.8
SENP3Q9H4L4 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC26.3■■□□□ 1.8
SENP3Q9H4L4 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
SENP3Q9H4L4 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC26.3■■□□□ 1.8
SENP3Q9H4L4 AC116407.3-201ENST00000623905 1129 ntBASIC26.3■■□□□ 1.8
SENP3Q9H4L4 ZNF259P1-201ENST00000407656 1365 ntBASIC26.3■■□□□ 1.8
SENP3Q9H4L4 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC26.3■■□□□ 1.8
SENP3Q9H4L4 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC26.3■■□□□ 1.8
SENP3Q9H4L4 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
SENP3Q9H4L4 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC26.3■■□□□ 1.8
SENP3Q9H4L4 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC26.3■■□□□ 1.8
SENP3Q9H4L4 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
SENP3Q9H4L4 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SENP3Q9H4L4 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC26.29■■□□□ 1.8
SENP3Q9H4L4 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
SENP3Q9H4L4 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SENP3Q9H4L4 FEM1AP3-201ENST00000403722 1741 ntBASIC26.29■■□□□ 1.8
SENP3Q9H4L4 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC26.29■■□□□ 1.8
SENP3Q9H4L4 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
SENP3Q9H4L4 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SENP3Q9H4L4 AL035658.1-201ENST00000415054 357 ntTSL 3 BASIC26.29■■□□□ 1.8
SENP3Q9H4L4 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC26.29■■□□□ 1.8
SENP3Q9H4L4 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC26.29■■□□□ 1.8
SENP3Q9H4L4 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC26.29■■□□□ 1.8
SENP3Q9H4L4 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
SENP3Q9H4L4 AC092656.1-202ENST00000515843 998 ntTSL 4 BASIC26.29■■□□□ 1.8
SENP3Q9H4L4 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
SENP3Q9H4L4 AL121594.4-201ENST00000556211 1196 ntBASIC26.29■■□□□ 1.8
SENP3Q9H4L4 AC007599.1-201ENST00000568688 1174 ntBASIC26.29■■□□□ 1.8
SENP3Q9H4L4 PAM16-208ENST00000573553 722 ntTSL 2 BASIC26.29■■□□□ 1.8
SENP3Q9H4L4 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC26.29■■□□□ 1.8
SENP3Q9H4L4 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC26.29■■□□□ 1.8
SENP3Q9H4L4 AL391834.2-201ENST00000609982 546 ntBASIC26.29■■□□□ 1.8
SENP3Q9H4L4 FAM215A-202ENST00000632077 792 ntBASIC26.29■■□□□ 1.8
SENP3Q9H4L4 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC26.29■■□□□ 1.8
SENP3Q9H4L4 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC26.29■■□□□ 1.8
SENP3Q9H4L4 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC26.29■■□□□ 1.8
SENP3Q9H4L4 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
SENP3Q9H4L4 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC26.29■■□□□ 1.8
SENP3Q9H4L4 PNLIP-201ENST00000369221 1483 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SENP3Q9H4L4 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SENP3Q9H4L4 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
SENP3Q9H4L4 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
SENP3Q9H4L4 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
SENP3Q9H4L4 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
SENP3Q9H4L4 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
SENP3Q9H4L4 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
SENP3Q9H4L4 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC26.28■■□□□ 1.8
SENP3Q9H4L4 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC26.28■■□□□ 1.8
SENP3Q9H4L4 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC26.28■■□□□ 1.8
SENP3Q9H4L4 ID2-AS1-207ENST00000455965 794 ntTSL 4 BASIC26.28■■□□□ 1.8
SENP3Q9H4L4 AC018541.1-201ENST00000517706 764 ntTSL 3 BASIC26.28■■□□□ 1.8
SENP3Q9H4L4 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
SENP3Q9H4L4 AC025419.1-202ENST00000535315 744 ntTSL 3 BASIC26.28■■□□□ 1.8
SENP3Q9H4L4 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC26.28■■□□□ 1.8
SENP3Q9H4L4 AF186192.2-204ENST00000581667 524 ntBASIC26.28■■□□□ 1.8
SENP3Q9H4L4 AL354696.1-201ENST00000614652 497 ntBASIC26.28■■□□□ 1.8
SENP3Q9H4L4 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.8
SENP3Q9H4L4 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC26.28■■□□□ 1.8
SENP3Q9H4L4 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC26.28■■□□□ 1.8
SENP3Q9H4L4 GSTA2-201ENST00000493422 1313 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
SENP3Q9H4L4 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC26.28■■□□□ 1.8
SENP3Q9H4L4 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
SENP3Q9H4L4 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
SENP3Q9H4L4 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
SENP3Q9H4L4 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC26.28■■□□□ 1.8
SENP3Q9H4L4 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
SENP3Q9H4L4 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC26.28■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 69.2 ms