Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Brf1Q8CFK2 Rgs20-201ENSMUST00000002533 1778 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Brf1Q8CFK2 Asphd1-202ENSMUST00000106339 518 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Brf1Q8CFK2 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Brf1Q8CFK2 Klk2-ps-201ENSMUST00000205342 571 ntBASIC17.77■□□□□ 0.44
Brf1Q8CFK2 Gm45612-201ENSMUST00000211320 160 ntBASIC17.77■□□□□ 0.44
Brf1Q8CFK2 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
Brf1Q8CFK2 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Brf1Q8CFK2 Psen2-204ENSMUST00000111106 2020 ntAPPRIS P2 TSL 5 BASIC17.77■□□□□ 0.43
Brf1Q8CFK2 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Brf1Q8CFK2 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.43
Brf1Q8CFK2 Anp32e-201ENSMUST00000015893 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Brf1Q8CFK2 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
Brf1Q8CFK2 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Brf1Q8CFK2 Lrrc32-203ENSMUST00000205956 4576 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Brf1Q8CFK2 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Brf1Q8CFK2 Arhgap44-201ENSMUST00000047463 4074 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Brf1Q8CFK2 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Brf1Q8CFK2 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Brf1Q8CFK2 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Brf1Q8CFK2 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Brf1Q8CFK2 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Brf1Q8CFK2 Gm6973-201ENSMUST00000117080 721 ntBASIC17.76■□□□□ 0.43
Brf1Q8CFK2 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC17.76■□□□□ 0.43
Brf1Q8CFK2 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC17.76■□□□□ 0.43
Brf1Q8CFK2 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Brf1Q8CFK2 Higd1a-206ENSMUST00000215300 605 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
Brf1Q8CFK2 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Brf1Q8CFK2 Cblb-201ENSMUST00000114471 6648 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Brf1Q8CFK2 Fen1-204ENSMUST00000156291 2373 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
Brf1Q8CFK2 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Brf1Q8CFK2 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Brf1Q8CFK2 Slc6a8-203ENSMUST00000114465 3314 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Brf1Q8CFK2 Mfsd6l-201ENSMUST00000053211 2060 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Brf1Q8CFK2 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Brf1Q8CFK2 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Brf1Q8CFK2 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Brf1Q8CFK2 Nrn1-204ENSMUST00000224323 1779 ntBASIC17.76■□□□□ 0.43
Brf1Q8CFK2 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Brf1Q8CFK2 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Brf1Q8CFK2 Adcy3-204ENSMUST00000127756 4672 ntAPPRIS P3 TSL 5 BASIC17.75■□□□□ 0.43
Brf1Q8CFK2 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Brf1Q8CFK2 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Brf1Q8CFK2 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Brf1Q8CFK2 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Brf1Q8CFK2 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Brf1Q8CFK2 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Brf1Q8CFK2 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC17.75■□□□□ 0.43
Brf1Q8CFK2 Klk6-202ENSMUST00000107967 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Brf1Q8CFK2 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC17.75■□□□□ 0.43
Brf1Q8CFK2 Tma7-201ENSMUST00000167504 944 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Brf1Q8CFK2 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC17.75■□□□□ 0.43
Brf1Q8CFK2 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Brf1Q8CFK2 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Brf1Q8CFK2 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Brf1Q8CFK2 1500035N22Rik-201ENSMUST00000075081 865 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Brf1Q8CFK2 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Brf1Q8CFK2 Ap1g1-202ENSMUST00000093157 6899 ntAPPRIS P3 TSL 5 BASIC17.75■□□□□ 0.43
Brf1Q8CFK2 Gm16796-201ENSMUST00000126086 3172 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Brf1Q8CFK2 Synj2-210ENSMUST00000115791 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Brf1Q8CFK2 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Brf1Q8CFK2 Ap5m1-205ENSMUST00000227431 3757 ntBASIC17.75■□□□□ 0.43
Brf1Q8CFK2 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Brf1Q8CFK2 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Brf1Q8CFK2 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Brf1Q8CFK2 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Brf1Q8CFK2 Gm5648-201ENSMUST00000122244 1587 ntBASIC17.74■□□□□ 0.43
Brf1Q8CFK2 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Brf1Q8CFK2 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Brf1Q8CFK2 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Brf1Q8CFK2 Syk-203ENSMUST00000120135 5363 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Brf1Q8CFK2 AC126250.1-201ENSMUST00000228343 1768 ntBASIC17.74■□□□□ 0.43
Brf1Q8CFK2 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
Brf1Q8CFK2 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Brf1Q8CFK2 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Brf1Q8CFK2 Npr3-201ENSMUST00000066529 6892 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Brf1Q8CFK2 Gm11745-201ENSMUST00000121669 448 ntBASIC17.74■□□□□ 0.43
Brf1Q8CFK2 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
Brf1Q8CFK2 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC17.74■□□□□ 0.43
Brf1Q8CFK2 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC17.74■□□□□ 0.43
Brf1Q8CFK2 Sirpa-213ENSMUST00000163034 677 ntTSL 3 BASIC17.74■□□□□ 0.43
Brf1Q8CFK2 Gm45231-201ENSMUST00000208629 1064 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Brf1Q8CFK2 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Brf1Q8CFK2 Msantd1-204ENSMUST00000212362 798 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
Brf1Q8CFK2 Ndufaf2-202ENSMUST00000223734 556 ntBASIC17.74■□□□□ 0.43
Brf1Q8CFK2 Lce3e-201ENSMUST00000098886 607 ntAPPRIS P1 TSL 3 BASIC17.74■□□□□ 0.43
Brf1Q8CFK2 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Brf1Q8CFK2 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Brf1Q8CFK2 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Brf1Q8CFK2 Fbxl12-205ENSMUST00000140702 1555 ntBASIC17.74■□□□□ 0.43
Brf1Q8CFK2 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Brf1Q8CFK2 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Brf1Q8CFK2 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Brf1Q8CFK2 Med14-202ENSMUST00000096495 6963 ntAPPRIS P2 TSL 5 BASIC17.74■□□□□ 0.43
Brf1Q8CFK2 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Brf1Q8CFK2 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
Brf1Q8CFK2 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Brf1Q8CFK2 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Brf1Q8CFK2 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Brf1Q8CFK2 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 49.1 ms