Protein–RNA interactions for Protein: Q811S7

Ubp1, Upstream-binding protein 1, mousemouse

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubp1Q811S7 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ubp1Q811S7 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
Ubp1Q811S7 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Ubp1Q811S7 Gm21009-201ENSMUST00000197169 1669 ntBASIC14.53□□□□□ -0.08
Ubp1Q811S7 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ubp1Q811S7 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC14.53□□□□□ -0.08
Ubp1Q811S7 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ubp1Q811S7 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ubp1Q811S7 Rcn3-208ENSMUST00000211352 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ubp1Q811S7 Klk6-202ENSMUST00000107967 1172 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ubp1Q811S7 Gm14822-201ENSMUST00000122247 291 ntBASIC14.53□□□□□ -0.08
Ubp1Q811S7 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC14.53□□□□□ -0.08
Ubp1Q811S7 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Ubp1Q811S7 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC14.53□□□□□ -0.08
Ubp1Q811S7 Ndufa1-201ENSMUST00000016571 419 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ubp1Q811S7 Gm8597-201ENSMUST00000191525 1109 ntBASIC14.53□□□□□ -0.08
Ubp1Q811S7 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC14.53□□□□□ -0.08
Ubp1Q811S7 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
Ubp1Q811S7 mt-Rnr1-201ENSMUST00000082388 955 ntBASIC14.53□□□□□ -0.08
Ubp1Q811S7 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ubp1Q811S7 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ubp1Q811S7 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC14.53□□□□□ -0.08
Ubp1Q811S7 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ubp1Q811S7 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC14.53□□□□□ -0.08
Ubp1Q811S7 Arhgef40-204ENSMUST00000182061 4756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ubp1Q811S7 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ubp1Q811S7 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Ubp1Q811S7 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Ubp1Q811S7 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ubp1Q811S7 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ubp1Q811S7 Pigv-201ENSMUST00000062118 3979 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ubp1Q811S7 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ubp1Q811S7 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ubp1Q811S7 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ubp1Q811S7 Wdr90-201ENSMUST00000079461 5991 ntAPPRIS P2 TSL 5 BASIC14.53□□□□□ -0.08
Ubp1Q811S7 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Ubp1Q811S7 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Ubp1Q811S7 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Ubp1Q811S7 Gm5648-201ENSMUST00000122244 1587 ntBASIC14.52□□□□□ -0.08
Ubp1Q811S7 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Ubp1Q811S7 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Ubp1Q811S7 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC14.52□□□□□ -0.08
Ubp1Q811S7 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Ubp1Q811S7 Zfp868-202ENSMUST00000121886 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Ubp1Q811S7 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Ubp1Q811S7 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Ubp1Q811S7 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC14.52□□□□□ -0.09
Ubp1Q811S7 Gm16026-204ENSMUST00000162652 683 ntBASIC14.52□□□□□ -0.09
Ubp1Q811S7 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC14.52□□□□□ -0.09
Ubp1Q811S7 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC14.52□□□□□ -0.09
Ubp1Q811S7 AC161424.1-202ENSMUST00000213570 767 ntTSL 3 BASIC14.52□□□□□ -0.09
Ubp1Q811S7 CT025555.1-201ENSMUST00000225901 1217 ntBASIC14.52□□□□□ -0.09
Ubp1Q811S7 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC14.52□□□□□ -0.09
Ubp1Q811S7 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Ubp1Q811S7 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
Ubp1Q811S7 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Ubp1Q811S7 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Ubp1Q811S7 P4ha1-202ENSMUST00000092512 2387 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Ubp1Q811S7 Gm8096-201ENSMUST00000209921 1591 ntBASIC14.51□□□□□ -0.09
Ubp1Q811S7 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ubp1Q811S7 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ubp1Q811S7 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ubp1Q811S7 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Ubp1Q811S7 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Ubp1Q811S7 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ubp1Q811S7 Fbxo21-201ENSMUST00000035579 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ubp1Q811S7 Col4a1-201ENSMUST00000033898 6615 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ubp1Q811S7 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Ubp1Q811S7 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ubp1Q811S7 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
Ubp1Q811S7 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ubp1Q811S7 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Ubp1Q811S7 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Ubp1Q811S7 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Ubp1Q811S7 Rpph1-201ENSMUST00000175096 319 ntBASIC14.51□□□□□ -0.09
Ubp1Q811S7 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Ubp1Q811S7 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC14.51□□□□□ -0.09
Ubp1Q811S7 Ndufaf2-202ENSMUST00000223734 556 ntBASIC14.51□□□□□ -0.09
Ubp1Q811S7 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ubp1Q811S7 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ubp1Q811S7 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
Ubp1Q811S7 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ubp1Q811S7 Gm15500-202ENSMUST00000071641 1019 ntBASIC14.51□□□□□ -0.09
Ubp1Q811S7 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ubp1Q811S7 Olfr520-201ENSMUST00000098264 951 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
Ubp1Q811S7 Gm14026-201ENSMUST00000120625 1789 ntBASIC14.51□□□□□ -0.09
Ubp1Q811S7 Tle3-205ENSMUST00000159630 4065 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Ubp1Q811S7 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ubp1Q811S7 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ubp1Q811S7 Ppp1r8-201ENSMUST00000030702 2037 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ubp1Q811S7 Slc16a6-202ENSMUST00000070152 4219 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ubp1Q811S7 Sowaha-201ENSMUST00000104955 3702 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
Ubp1Q811S7 Pax7-201ENSMUST00000030508 5854 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ubp1Q811S7 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ubp1Q811S7 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ubp1Q811S7 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ubp1Q811S7 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Ubp1Q811S7 Agap1-201ENSMUST00000027521 11921 ntAPPRIS P4 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ubp1Q811S7 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ubp1Q811S7 Nacc2-201ENSMUST00000028300 6378 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 51.2 ms