Protein–RNA interactions for Protein: Q6P1Y1

Rtl3, Retrotransposon Gag-like protein 3, mousemouse

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rtl3Q6P1Y1 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Rtl3Q6P1Y1 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Rtl3Q6P1Y1 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC15.22■□□□□ 0.03
Rtl3Q6P1Y1 Adam11-201ENSMUST00000068150 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Rtl3Q6P1Y1 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Rtl3Q6P1Y1 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Rtl3Q6P1Y1 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Rtl3Q6P1Y1 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC15.21■□□□□ 0.03
Rtl3Q6P1Y1 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Rtl3Q6P1Y1 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC15.21■□□□□ 0.03
Rtl3Q6P1Y1 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Rtl3Q6P1Y1 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Rtl3Q6P1Y1 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC15.21■□□□□ 0.03
Rtl3Q6P1Y1 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Rtl3Q6P1Y1 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Rtl3Q6P1Y1 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Rtl3Q6P1Y1 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Rtl3Q6P1Y1 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Rtl3Q6P1Y1 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Rtl3Q6P1Y1 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Rtl3Q6P1Y1 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC15.21■□□□□ 0.03
Rtl3Q6P1Y1 Gm6973-201ENSMUST00000117080 721 ntBASIC15.21■□□□□ 0.03
Rtl3Q6P1Y1 Gm12017-201ENSMUST00000122453 1003 ntBASIC15.21■□□□□ 0.03
Rtl3Q6P1Y1 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Rtl3Q6P1Y1 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Rtl3Q6P1Y1 AA543401-201ENSMUST00000164248 1269 ntBASIC15.21■□□□□ 0.03
Rtl3Q6P1Y1 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Rtl3Q6P1Y1 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Rtl3Q6P1Y1 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC15.21■□□□□ 0.03
Rtl3Q6P1Y1 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Rtl3Q6P1Y1 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Rtl3Q6P1Y1 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Rtl3Q6P1Y1 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Rtl3Q6P1Y1 Rgl1-203ENSMUST00000111859 5092 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Rtl3Q6P1Y1 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Rtl3Q6P1Y1 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC15.21■□□□□ 0.03
Rtl3Q6P1Y1 2810474O19Rik-202ENSMUST00000100765 5356 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Rtl3Q6P1Y1 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
Rtl3Q6P1Y1 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC15.21■□□□□ 0.02
Rtl3Q6P1Y1 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Rtl3Q6P1Y1 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.02
Rtl3Q6P1Y1 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Rtl3Q6P1Y1 Lat2-201ENSMUST00000036362 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Rtl3Q6P1Y1 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rtl3Q6P1Y1 P2ry2-206ENSMUST00000208340 2693 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rtl3Q6P1Y1 Ydjc-203ENSMUST00000115706 3097 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Rtl3Q6P1Y1 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rtl3Q6P1Y1 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Rtl3Q6P1Y1 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Rtl3Q6P1Y1 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rtl3Q6P1Y1 Arhgap26-201ENSMUST00000097593 7898 ntAPPRIS P2 TSL 5 BASIC15.2■□□□□ 0.02
Rtl3Q6P1Y1 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rtl3Q6P1Y1 Mbtps2-201ENSMUST00000058098 4797 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Rtl3Q6P1Y1 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rtl3Q6P1Y1 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Rtl3Q6P1Y1 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Rtl3Q6P1Y1 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rtl3Q6P1Y1 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rtl3Q6P1Y1 AC131187.1-201ENSMUST00000224567 809 ntBASIC15.2■□□□□ 0.02
Rtl3Q6P1Y1 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rtl3Q6P1Y1 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rtl3Q6P1Y1 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC15.2■□□□□ 0.02
Rtl3Q6P1Y1 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rtl3Q6P1Y1 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rtl3Q6P1Y1 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rtl3Q6P1Y1 Apc-202ENSMUST00000079362 8867 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rtl3Q6P1Y1 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rtl3Q6P1Y1 Ankrd33b-204ENSMUST00000123325 7466 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rtl3Q6P1Y1 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Rtl3Q6P1Y1 Tmem33-204ENSMUST00000161369 6164 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rtl3Q6P1Y1 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rtl3Q6P1Y1 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Rtl3Q6P1Y1 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rtl3Q6P1Y1 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Rtl3Q6P1Y1 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rtl3Q6P1Y1 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rtl3Q6P1Y1 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rtl3Q6P1Y1 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rtl3Q6P1Y1 Gm37305-201ENSMUST00000195714 4279 ntBASIC15.19■□□□□ 0.02
Rtl3Q6P1Y1 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rtl3Q6P1Y1 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC15.19■□□□□ 0.02
Rtl3Q6P1Y1 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Rtl3Q6P1Y1 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Rtl3Q6P1Y1 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rtl3Q6P1Y1 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Rtl3Q6P1Y1 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Rtl3Q6P1Y1 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Rtl3Q6P1Y1 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC15.19■□□□□ 0.02
Rtl3Q6P1Y1 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rtl3Q6P1Y1 Mxra8-201ENSMUST00000030947 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rtl3Q6P1Y1 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rtl3Q6P1Y1 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
Rtl3Q6P1Y1 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Rtl3Q6P1Y1 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC15.19■□□□□ 0.02
Rtl3Q6P1Y1 Gm18889-201ENSMUST00000174284 929 ntBASIC15.19■□□□□ 0.02
Rtl3Q6P1Y1 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
Rtl3Q6P1Y1 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC15.19■□□□□ 0.02
Rtl3Q6P1Y1 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rtl3Q6P1Y1 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC15.19■□□□□ 0.02
Rtl3Q6P1Y1 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC15.19■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 34.1 ms