Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
ShhQ62226 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC13.75□□□□□ -0.21
ShhQ62226 Gm18489-201ENSMUST00000172565 551 ntBASIC13.75□□□□□ -0.21
ShhQ62226 Pfdn6-204ENSMUST00000174048 560 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
ShhQ62226 Gm34866-201ENSMUST00000196146 515 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
ShhQ62226 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
ShhQ62226 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
ShhQ62226 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
ShhQ62226 Htr7-205ENSMUST00000166074 3079 ntTSL 5 BASIC13.75□□□□□ -0.21
ShhQ62226 Gm37305-201ENSMUST00000195714 4279 ntBASIC13.75□□□□□ -0.21
ShhQ62226 Apol8-201ENSMUST00000070911 1838 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
ShhQ62226 Kif1c-203ENSMUST00000102554 6684 ntAPPRIS P2 TSL 5 BASIC13.75□□□□□ -0.21
ShhQ62226 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
ShhQ62226 AC013548.1-201ENSMUST00000228850 4738 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
ShhQ62226 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
ShhQ62226 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
ShhQ62226 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
ShhQ62226 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
ShhQ62226 Gm10584-201ENSMUST00000207036 2628 ntBASIC13.75□□□□□ -0.21
ShhQ62226 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
ShhQ62226 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
ShhQ62226 Sema4c-201ENSMUST00000114991 3773 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
ShhQ62226 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
ShhQ62226 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC13.74□□□□□ -0.21
ShhQ62226 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
ShhQ62226 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
ShhQ62226 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
ShhQ62226 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
ShhQ62226 Gm38058-201ENSMUST00000194323 4368 ntBASIC13.74□□□□□ -0.21
ShhQ62226 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC13.74□□□□□ -0.21
ShhQ62226 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
ShhQ62226 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
ShhQ62226 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
ShhQ62226 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
ShhQ62226 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC13.74□□□□□ -0.21
ShhQ62226 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
ShhQ62226 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
ShhQ62226 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
ShhQ62226 Parm1-201ENSMUST00000040576 5068 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
ShhQ62226 Tmem26-201ENSMUST00000080995 5048 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
ShhQ62226 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
ShhQ62226 Lrwd1-201ENSMUST00000006301 2473 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
ShhQ62226 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
ShhQ62226 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
ShhQ62226 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
ShhQ62226 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
ShhQ62226 Ddi2-201ENSMUST00000102484 9553 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
ShhQ62226 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
ShhQ62226 Foxp2-207ENSMUST00000115477 6760 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
ShhQ62226 Gm43598-201ENSMUST00000202482 2479 ntBASIC13.73□□□□□ -0.21
ShhQ62226 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
ShhQ62226 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
ShhQ62226 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
ShhQ62226 Scara3-201ENSMUST00000042046 3597 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
ShhQ62226 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
ShhQ62226 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
ShhQ62226 Rps19-201ENSMUST00000108428 1284 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
ShhQ62226 Gm11453-201ENSMUST00000117318 1007 ntBASIC13.73□□□□□ -0.21
ShhQ62226 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC13.73□□□□□ -0.21
ShhQ62226 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
ShhQ62226 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
ShhQ62226 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
ShhQ62226 H2-Pa-201ENSMUST00000182803 626 ntBASIC13.73□□□□□ -0.21
ShhQ62226 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
ShhQ62226 Gm10253-201ENSMUST00000194270 940 ntBASIC13.73□□□□□ -0.21
ShhQ62226 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
ShhQ62226 Aprt-209ENSMUST00000213062 560 ntTSL 2 BASIC13.73□□□□□ -0.21
ShhQ62226 9230110C19Rik-202ENSMUST00000215478 533 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
ShhQ62226 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
ShhQ62226 Gpr146-202ENSMUST00000053120 1040 ntBASIC13.73□□□□□ -0.21
ShhQ62226 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
ShhQ62226 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
ShhQ62226 Efs-202ENSMUST00000227037 2540 ntBASIC13.73□□□□□ -0.21
ShhQ62226 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
ShhQ62226 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
ShhQ62226 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
ShhQ62226 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
ShhQ62226 Acss3-201ENSMUST00000044668 2494 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
ShhQ62226 Tmem269-202ENSMUST00000212054 1504 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
ShhQ62226 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
ShhQ62226 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
ShhQ62226 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC13.73□□□□□ -0.21
ShhQ62226 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC13.73□□□□□ -0.21
ShhQ62226 Poli-201ENSMUST00000043286 2591 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
ShhQ62226 Gm13613-201ENSMUST00000126240 1444 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
ShhQ62226 Scube1-201ENSMUST00000016907 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
ShhQ62226 Sike1-201ENSMUST00000029447 7375 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
ShhQ62226 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
ShhQ62226 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
ShhQ62226 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC13.72□□□□□ -0.21
ShhQ62226 Sowaha-201ENSMUST00000104955 3702 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
ShhQ62226 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
ShhQ62226 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
ShhQ62226 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
ShhQ62226 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
ShhQ62226 Fbxo41-201ENSMUST00000159062 6505 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
ShhQ62226 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC13.72□□□□□ -0.21
ShhQ62226 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
ShhQ62226 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC13.72□□□□□ -0.21
ShhQ62226 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC13.72□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 85.1 ms