Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col8a1Q00780 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col8a1Q00780 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col8a1Q00780 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC12.56□□□□□ -0.4
Col8a1Q00780 Myh14-202ENSMUST00000107899 6390 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col8a1Q00780 Gm26852-201ENSMUST00000180691 5751 ntTSL 5 BASIC12.56□□□□□ -0.4
Col8a1Q00780 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col8a1Q00780 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col8a1Q00780 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col8a1Q00780 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col8a1Q00780 Synm-202ENSMUST00000074233 7818 ntAPPRIS P4 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col8a1Q00780 Gtf2h4-207ENSMUST00000160734 1569 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Col8a1Q00780 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col8a1Q00780 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col8a1Q00780 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
Col8a1Q00780 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col8a1Q00780 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC12.55□□□□□ -0.4
Col8a1Q00780 Mettl7a1-201ENSMUST00000067752 1883 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col8a1Q00780 Gm43072-201ENSMUST00000200283 1671 ntBASIC12.55□□□□□ -0.4
Col8a1Q00780 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC12.55□□□□□ -0.4
Col8a1Q00780 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col8a1Q00780 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col8a1Q00780 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col8a1Q00780 Yod1-201ENSMUST00000049813 6128 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col8a1Q00780 Gm24543-201ENSMUST00000103867 82 ntBASIC12.55□□□□□ -0.4
Col8a1Q00780 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC12.55□□□□□ -0.4
Col8a1Q00780 Gm4875-201ENSMUST00000118257 786 ntBASIC12.55□□□□□ -0.4
Col8a1Q00780 Gm15491-201ENSMUST00000133963 751 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Col8a1Q00780 Pcgf1-202ENSMUST00000165164 918 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col8a1Q00780 Commd6-203ENSMUST00000168587 519 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col8a1Q00780 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Col8a1Q00780 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col8a1Q00780 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col8a1Q00780 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col8a1Q00780 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col8a1Q00780 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Col8a1Q00780 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC12.55□□□□□ -0.4
Col8a1Q00780 Ralgapb-201ENSMUST00000046274 8366 ntAPPRIS ALT1 TSL 5 BASIC12.55□□□□□ -0.4
Col8a1Q00780 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Col8a1Q00780 Ahdc1-202ENSMUST00000105914 5898 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Col8a1Q00780 Gm13337-201ENSMUST00000119183 1594 ntBASIC12.55□□□□□ -0.4
Col8a1Q00780 Hectd2-201ENSMUST00000047247 4731 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col8a1Q00780 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC12.55□□□□□ -0.4
Col8a1Q00780 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col8a1Q00780 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col8a1Q00780 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Col8a1Q00780 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col8a1Q00780 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Col8a1Q00780 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col8a1Q00780 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC12.54□□□□□ -0.4
Col8a1Q00780 Prkcz2-201ENSMUST00000206136 1756 ntBASIC12.54□□□□□ -0.4
Col8a1Q00780 Wdr90-201ENSMUST00000079461 5991 ntAPPRIS P2 TSL 5 BASIC12.54□□□□□ -0.4
Col8a1Q00780 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col8a1Q00780 Ppp1r14d-202ENSMUST00000110820 790 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Col8a1Q00780 Mir1897-201ENSMUST00000122581 272 ntBASIC12.54□□□□□ -0.4
Col8a1Q00780 Sf3a2-204ENSMUST00000151928 781 ntTSL 5 BASIC12.54□□□□□ -0.4
Col8a1Q00780 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Col8a1Q00780 Gm17150-201ENSMUST00000165577 381 ntBASIC12.54□□□□□ -0.4
Col8a1Q00780 Poc1a-205ENSMUST00000191434 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col8a1Q00780 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC12.54□□□□□ -0.4
Col8a1Q00780 Gm45668-201ENSMUST00000211271 493 ntBASIC12.54□□□□□ -0.4
Col8a1Q00780 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col8a1Q00780 S100a16-201ENSMUST00000098910 1123 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col8a1Q00780 Miga1-202ENSMUST00000073089 4965 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col8a1Q00780 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col8a1Q00780 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col8a1Q00780 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col8a1Q00780 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col8a1Q00780 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col8a1Q00780 Etfrf1-205ENSMUST00000111724 1618 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col8a1Q00780 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Col8a1Q00780 Tubgcp4-202ENSMUST00000110657 1992 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Col8a1Q00780 Lpar5-201ENSMUST00000088292 1393 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col8a1Q00780 Senp7-211ENSMUST00000202000 3218 ntTSL 2 BASIC12.54□□□□□ -0.4
Col8a1Q00780 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col8a1Q00780 Slc16a6-202ENSMUST00000070152 4219 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col8a1Q00780 Tdrd12-205ENSMUST00000205407 1412 ntTSL 5 BASIC12.54□□□□□ -0.4
Col8a1Q00780 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col8a1Q00780 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Col8a1Q00780 Adk-207ENSMUST00000224069 1818 ntAPPRIS ALT1 BASIC12.53□□□□□ -0.4
Col8a1Q00780 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col8a1Q00780 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col8a1Q00780 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC12.53□□□□□ -0.4
Col8a1Q00780 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col8a1Q00780 Phldb1-201ENSMUST00000034611 5461 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col8a1Q00780 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col8a1Q00780 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC12.53□□□□□ -0.4
Col8a1Q00780 Defb30-203ENSMUST00000111208 503 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col8a1Q00780 Defb30-204ENSMUST00000111209 721 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col8a1Q00780 Gm11918-201ENSMUST00000121660 179 ntBASIC12.53□□□□□ -0.4
Col8a1Q00780 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.4
Col8a1Q00780 Gm37117-201ENSMUST00000194238 589 ntTSL 5 BASIC12.53□□□□□ -0.4
Col8a1Q00780 Coa6-202ENSMUST00000211868 564 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col8a1Q00780 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC12.53□□□□□ -0.4
Col8a1Q00780 AC090659.2-201ENSMUST00000225378 1186 ntBASIC12.53□□□□□ -0.4
Col8a1Q00780 Il31-201ENSMUST00000031389 806 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col8a1Q00780 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Col8a1Q00780 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col8a1Q00780 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col8a1Q00780 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 27.1 ms