Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Gm5864-201ENSMUST00000202263 970 ntBASIC16.21■□□□□ 0.19
Hmgb1P63158 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Hmgb1P63158 Slc39a11-201ENSMUST00000042657 2781 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
Hmgb1P63158 Itgb3-201ENSMUST00000021028 5784 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Hmgb1P63158 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC16.21■□□□□ 0.19
Hmgb1P63158 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Hmgb1P63158 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Hmgb1P63158 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Hmgb1P63158 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Hmgb1P63158 Pou2f3-202ENSMUST00000176636 2522 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Hmgb1P63158 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC16.2■□□□□ 0.18
Hmgb1P63158 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC16.2■□□□□ 0.18
Hmgb1P63158 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Hmgb1P63158 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC16.2■□□□□ 0.18
Hmgb1P63158 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Hmgb1P63158 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Hmgb1P63158 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
Hmgb1P63158 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Hmgb1P63158 Zfp74-203ENSMUST00000108211 1278 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Hmgb1P63158 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Hmgb1P63158 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Hmgb1P63158 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Hmgb1P63158 Pih1d1-206ENSMUST00000210139 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Hmgb1P63158 AC131709.1-201ENSMUST00000224731 1180 ntBASIC16.2■□□□□ 0.18
Hmgb1P63158 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC16.2■□□□□ 0.18
Hmgb1P63158 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Hmgb1P63158 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
Hmgb1P63158 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC16.2■□□□□ 0.18
Hmgb1P63158 Fbxo21-201ENSMUST00000035579 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Hmgb1P63158 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Hmgb1P63158 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Hmgb1P63158 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Hmgb1P63158 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Hmgb1P63158 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Hmgb1P63158 B4galt3-202ENSMUST00000111313 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Hmgb1P63158 Csad-201ENSMUST00000023805 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Hmgb1P63158 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Hmgb1P63158 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Hmgb1P63158 Scube1-201ENSMUST00000016907 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Hmgb1P63158 Gm44981-201ENSMUST00000205549 1943 ntBASIC16.19■□□□□ 0.18
Hmgb1P63158 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Hmgb1P63158 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Hmgb1P63158 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Hmgb1P63158 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Hmgb1P63158 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Hmgb1P63158 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Hmgb1P63158 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Hmgb1P63158 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Hmgb1P63158 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Hmgb1P63158 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Hmgb1P63158 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Hmgb1P63158 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Hmgb1P63158 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Hmgb1P63158 Eif4ebp2-201ENSMUST00000020288 5784 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Hmgb1P63158 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Hmgb1P63158 Rad23b-201ENSMUST00000030134 3810 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Hmgb1P63158 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Hmgb1P63158 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Hmgb1P63158 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Hmgb1P63158 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Hmgb1P63158 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Hmgb1P63158 Ccdc32-201ENSMUST00000036470 1870 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Hmgb1P63158 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Hmgb1P63158 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Hmgb1P63158 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
Hmgb1P63158 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC16.18■□□□□ 0.18
Hmgb1P63158 Gm13884-201ENSMUST00000118103 829 ntBASIC16.18■□□□□ 0.18
Hmgb1P63158 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Hmgb1P63158 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Hmgb1P63158 Gm10819-201ENSMUST00000099988 561 ntBASIC16.18■□□□□ 0.18
Hmgb1P63158 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Hmgb1P63158 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Hmgb1P63158 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Hmgb1P63158 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Hmgb1P63158 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
Hmgb1P63158 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Hmgb1P63158 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC16.18■□□□□ 0.18
Hmgb1P63158 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Hmgb1P63158 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Hmgb1P63158 Slc52a3-203ENSMUST00000109859 2204 ntTSL 5 BASIC16.18■□□□□ 0.18
Hmgb1P63158 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Hmgb1P63158 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Hmgb1P63158 Foxo3-203ENSMUST00000105502 6848 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Hmgb1P63158 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Hmgb1P63158 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Hmgb1P63158 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Hmgb1P63158 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Hmgb1P63158 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC16.17■□□□□ 0.18
Hmgb1P63158 Hyou1-201ENSMUST00000066601 4432 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Hmgb1P63158 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC16.17■□□□□ 0.18
Hmgb1P63158 Gpt2-201ENSMUST00000034136 3639 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Hmgb1P63158 Il6ra-202ENSMUST00000197679 8639 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Hmgb1P63158 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC16.17■□□□□ 0.18
Hmgb1P63158 Gm4756-202ENSMUST00000208039 2344 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Hmgb1P63158 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Hmgb1P63158 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Hmgb1P63158 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Hmgb1P63158 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Hmgb1P63158 Mettl2-201ENSMUST00000021030 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Hmgb1P63158 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 44.2 ms