Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Thnsl2-202ENSMUST00000160918 2077 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdh11P55288 Map3k14-201ENSMUST00000021324 4246 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdh11P55288 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdh11P55288 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdh11P55288 Dlx6-202ENSMUST00000160937 2216 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdh11P55288 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Cdh11P55288 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Cdh11P55288 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdh11P55288 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdh11P55288 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdh11P55288 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdh11P55288 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
Cdh11P55288 Slc4a1-201ENSMUST00000006749 4545 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdh11P55288 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdh11P55288 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdh11P55288 Gm14140-201ENSMUST00000119999 995 ntBASIC13.44□□□□□ -0.26
Cdh11P55288 Gm11594-201ENSMUST00000122313 162 ntBASIC13.44□□□□□ -0.26
Cdh11P55288 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdh11P55288 Gm43073-201ENSMUST00000198200 1189 ntBASIC13.44□□□□□ -0.26
Cdh11P55288 AC154222.1-201ENSMUST00000223882 475 ntBASIC13.44□□□□□ -0.26
Cdh11P55288 AC159093.1-201ENSMUST00000227779 380 ntBASIC13.44□□□□□ -0.26
Cdh11P55288 Cela3a-201ENSMUST00000024200 958 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
Cdh11P55288 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdh11P55288 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdh11P55288 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Cdh11P55288 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdh11P55288 Gm21451-201ENSMUST00000111062 2775 ntBASIC13.44□□□□□ -0.26
Cdh11P55288 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdh11P55288 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdh11P55288 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
Cdh11P55288 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdh11P55288 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdh11P55288 Raver1-202ENSMUST00000217282 4234 ntAPPRIS ALT2 TSL 2 BASIC13.44□□□□□ -0.26
Cdh11P55288 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdh11P55288 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdh11P55288 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdh11P55288 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdh11P55288 Skap1-205ENSMUST00000107662 1861 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Cdh11P55288 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdh11P55288 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Cdh11P55288 Cacna2d1-205ENSMUST00000167946 7436 ntAPPRIS ALT1 TSL 5 BASIC13.44□□□□□ -0.26
Cdh11P55288 Myef2-206ENSMUST00000142718 2942 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
Cdh11P55288 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC13.43□□□□□ -0.26
Cdh11P55288 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cdh11P55288 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cdh11P55288 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cdh11P55288 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cdh11P55288 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
Cdh11P55288 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cdh11P55288 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cdh11P55288 Doc2b-201ENSMUST00000021209 4361 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cdh11P55288 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cdh11P55288 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cdh11P55288 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cdh11P55288 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
Cdh11P55288 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cdh11P55288 Gm23547-201ENSMUST00000158210 271 ntBASIC13.43□□□□□ -0.26
Cdh11P55288 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cdh11P55288 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC13.43□□□□□ -0.26
Cdh11P55288 Gm7556-201ENSMUST00000201178 1084 ntBASIC13.43□□□□□ -0.26
Cdh11P55288 AC162938.1-201ENSMUST00000213140 2323 ntBASIC13.43□□□□□ -0.26
Cdh11P55288 Nupl1-207ENSMUST00000225311 2475 ntBASIC13.43□□□□□ -0.26
Cdh11P55288 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cdh11P55288 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cdh11P55288 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cdh11P55288 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cdh11P55288 Gm10010-201ENSMUST00000071101 2346 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Cdh11P55288 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cdh11P55288 Scn4b-201ENSMUST00000060125 4982 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cdh11P55288 Ano7-201ENSMUST00000058682 2963 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cdh11P55288 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Cdh11P55288 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cdh11P55288 Cfl1-202ENSMUST00000209469 2354 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cdh11P55288 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cdh11P55288 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cdh11P55288 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
Cdh11P55288 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cdh11P55288 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cdh11P55288 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
Cdh11P55288 Mib2-201ENSMUST00000103176 3642 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cdh11P55288 Setd1b-204ENSMUST00000163030 8857 ntAPPRIS P2 TSL 5 BASIC13.43□□□□□ -0.26
Cdh11P55288 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Cdh11P55288 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
Cdh11P55288 Gm9856-201ENSMUST00000217077 2578 ntBASIC13.42□□□□□ -0.26
Cdh11P55288 Fgfr2-207ENSMUST00000117872 4223 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Cdh11P55288 Mst1-201ENSMUST00000035211 2262 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Cdh11P55288 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
Cdh11P55288 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
Cdh11P55288 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
Cdh11P55288 Gm8242-201ENSMUST00000193029 1420 ntBASIC13.42□□□□□ -0.26
Cdh11P55288 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Cdh11P55288 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Cdh11P55288 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC13.42□□□□□ -0.26
Cdh11P55288 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Cdh11P55288 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Cdh11P55288 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Cdh11P55288 Tspan11-201ENSMUST00000032501 5188 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Cdh11P55288 Col3a1-201ENSMUST00000087883 5564 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Cdh11P55288 Gm15467-201ENSMUST00000120582 445 ntBASIC13.42□□□□□ -0.26
Cdh11P55288 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC13.42□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms