Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC11.48□□□□□ -0.57
Hoxd3P09027 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Hoxd3P09027 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Hoxd3P09027 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC11.48□□□□□ -0.57
Hoxd3P09027 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC11.48□□□□□ -0.57
Hoxd3P09027 Gm45696-201ENSMUST00000212088 985 ntBASIC11.48□□□□□ -0.57
Hoxd3P09027 AU017674-201ENSMUST00000222864 720 ntTSL 3 BASIC11.48□□□□□ -0.57
Hoxd3P09027 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Hoxd3P09027 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC11.48□□□□□ -0.57
Hoxd3P09027 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC11.48□□□□□ -0.57
Hoxd3P09027 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Hoxd3P09027 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC11.48□□□□□ -0.57
Hoxd3P09027 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Hoxd3P09027 Aptx-202ENSMUST00000068125 5383 ntAPPRIS P4 TSL 1 (best) BASIC11.48□□□□□ -0.57
Hoxd3P09027 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Hoxd3P09027 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC11.48□□□□□ -0.57
Hoxd3P09027 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Hoxd3P09027 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Hoxd3P09027 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Hoxd3P09027 Per3-201ENSMUST00000103204 5999 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hoxd3P09027 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hoxd3P09027 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hoxd3P09027 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hoxd3P09027 Aifm1-202ENSMUST00000114945 2221 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
Hoxd3P09027 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hoxd3P09027 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hoxd3P09027 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Hoxd3P09027 Gm14026-201ENSMUST00000120625 1789 ntBASIC11.47□□□□□ -0.57
Hoxd3P09027 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Hoxd3P09027 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hoxd3P09027 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hoxd3P09027 Psmd5-201ENSMUST00000028225 4397 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hoxd3P09027 Gm13233-201ENSMUST00000118760 1443 ntBASIC11.47□□□□□ -0.57
Hoxd3P09027 Gm13244-201ENSMUST00000118855 1446 ntBASIC11.47□□□□□ -0.57
Hoxd3P09027 Rest-202ENSMUST00000113449 6924 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hoxd3P09027 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hoxd3P09027 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hoxd3P09027 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC11.47□□□□□ -0.57
Hoxd3P09027 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hoxd3P09027 Gm12439-201ENSMUST00000117162 365 ntBASIC11.47□□□□□ -0.57
Hoxd3P09027 Gm15920-201ENSMUST00000118998 402 ntBASIC11.47□□□□□ -0.57
Hoxd3P09027 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC11.47□□□□□ -0.57
Hoxd3P09027 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Hoxd3P09027 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Hoxd3P09027 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC11.47□□□□□ -0.57
Hoxd3P09027 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC11.47□□□□□ -0.57
Hoxd3P09027 Gm29331-201ENSMUST00000187215 605 ntTSL 5 BASIC11.47□□□□□ -0.57
Hoxd3P09027 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC11.47□□□□□ -0.57
Hoxd3P09027 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC11.47□□□□□ -0.57
Hoxd3P09027 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
Hoxd3P09027 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC11.47□□□□□ -0.57
Hoxd3P09027 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hoxd3P09027 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hoxd3P09027 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Hoxd3P09027 Grip2-205ENSMUST00000162300 5206 ntAPPRIS P2 TSL 5 BASIC11.47□□□□□ -0.57
Hoxd3P09027 Chml-201ENSMUST00000104984 6905 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
Hoxd3P09027 Chml-202ENSMUST00000209720 6905 ntTSL 5 BASIC11.47□□□□□ -0.57
Hoxd3P09027 Gemin5-202ENSMUST00000102711 4919 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
Hoxd3P09027 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hoxd3P09027 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hoxd3P09027 Exoc6-201ENSMUST00000066439 2729 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hoxd3P09027 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hoxd3P09027 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hoxd3P09027 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hoxd3P09027 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
Hoxd3P09027 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hoxd3P09027 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hoxd3P09027 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Hoxd3P09027 Nrg2-203ENSMUST00000115713 3001 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
Hoxd3P09027 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC11.46□□□□□ -0.57
Hoxd3P09027 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Hoxd3P09027 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.57
Hoxd3P09027 Ylpm1-201ENSMUST00000021670 7003 ntAPPRIS P2 TSL 5 BASIC11.46□□□□□ -0.57
Hoxd3P09027 Ralbp1-201ENSMUST00000024905 3765 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Hoxd3P09027 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Hoxd3P09027 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Hoxd3P09027 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Hoxd3P09027 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC11.46□□□□□ -0.57
Hoxd3P09027 Tsc2-217ENSMUST00000227745 5598 ntAPPRIS ALT2 BASIC11.46□□□□□ -0.57
Hoxd3P09027 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.57
Hoxd3P09027 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Hoxd3P09027 Osbpl8-202ENSMUST00000105275 7204 ntAPPRIS ALT1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Hoxd3P09027 Pde4dip-201ENSMUST00000045243 6185 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.57
Hoxd3P09027 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Hoxd3P09027 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Hoxd3P09027 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Hoxd3P09027 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Hoxd3P09027 Dnajc8-205ENSMUST00000105939 746 ntTSL 5 BASIC11.46□□□□□ -0.57
Hoxd3P09027 Gm12813-201ENSMUST00000119615 902 ntBASIC11.46□□□□□ -0.57
Hoxd3P09027 Gm13899-201ENSMUST00000121519 1255 ntBASIC11.46□□□□□ -0.57
Hoxd3P09027 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Hoxd3P09027 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Hoxd3P09027 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC11.46□□□□□ -0.57
Hoxd3P09027 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Hoxd3P09027 AC140397.2-201ENSMUST00000224213 834 ntBASIC11.46□□□□□ -0.57
Hoxd3P09027 AC154621.1-201ENSMUST00000226155 1119 ntBASIC11.46□□□□□ -0.57
Hoxd3P09027 AC131710.1-201ENSMUST00000228336 990 ntBASIC11.46□□□□□ -0.57
Hoxd3P09027 Crisp4-201ENSMUST00000026876 1252 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Hoxd3P09027 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Hoxd3P09027 Lin37-201ENSMUST00000043975 998 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 28.9 ms