Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Luc7l-203ENSMUST00000119928 1441 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Lmx1bO88609 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lmx1bO88609 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC13.35□□□□□ -0.27
Lmx1bO88609 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lmx1bO88609 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lmx1bO88609 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lmx1bO88609 Kpna4-201ENSMUST00000029353 8819 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Lmx1bO88609 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lmx1bO88609 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lmx1bO88609 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lmx1bO88609 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lmx1bO88609 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC13.34□□□□□ -0.27
Lmx1bO88609 Pltp-201ENSMUST00000059954 1809 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lmx1bO88609 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lmx1bO88609 Gfod1-201ENSMUST00000055341 6928 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lmx1bO88609 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lmx1bO88609 Gm5089-201ENSMUST00000081580 2008 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lmx1bO88609 Abhd15-201ENSMUST00000094004 2662 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lmx1bO88609 Lrrc32-203ENSMUST00000205956 4576 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Lmx1bO88609 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC13.34□□□□□ -0.27
Lmx1bO88609 Mir449b-201ENSMUST00000104833 80 ntBASIC13.34□□□□□ -0.27
Lmx1bO88609 Dnajc8-205ENSMUST00000105939 746 ntTSL 5 BASIC13.34□□□□□ -0.27
Lmx1bO88609 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Lmx1bO88609 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Lmx1bO88609 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC13.34□□□□□ -0.27
Lmx1bO88609 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC13.34□□□□□ -0.27
Lmx1bO88609 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC13.34□□□□□ -0.27
Lmx1bO88609 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC13.34□□□□□ -0.27
Lmx1bO88609 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Lmx1bO88609 Gm7774-201ENSMUST00000200064 533 ntBASIC13.34□□□□□ -0.27
Lmx1bO88609 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC13.34□□□□□ -0.27
Lmx1bO88609 Alkbh7-201ENSMUST00000002737 917 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lmx1bO88609 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Lmx1bO88609 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
Lmx1bO88609 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lmx1bO88609 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC13.34□□□□□ -0.27
Lmx1bO88609 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lmx1bO88609 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Lmx1bO88609 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Lmx1bO88609 Cacnb4-201ENSMUST00000078324 8225 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Lmx1bO88609 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Lmx1bO88609 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lmx1bO88609 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Lmx1bO88609 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lmx1bO88609 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lmx1bO88609 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC13.34□□□□□ -0.27
Lmx1bO88609 Wwc2-201ENSMUST00000057561 8678 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lmx1bO88609 Med14-202ENSMUST00000096495 6963 ntAPPRIS P2 TSL 5 BASIC13.33□□□□□ -0.27
Lmx1bO88609 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Lmx1bO88609 Mapk8ip3-203ENSMUST00000115229 5603 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.27
Lmx1bO88609 Coq6-203ENSMUST00000110278 1354 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.27
Lmx1bO88609 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Lmx1bO88609 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
Lmx1bO88609 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Lmx1bO88609 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Lmx1bO88609 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
Lmx1bO88609 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lmx1bO88609 Mccc2-201ENSMUST00000022148 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lmx1bO88609 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
Lmx1bO88609 Gm8242-201ENSMUST00000193029 1420 ntBASIC13.33□□□□□ -0.28
Lmx1bO88609 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC13.33□□□□□ -0.28
Lmx1bO88609 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lmx1bO88609 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lmx1bO88609 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lmx1bO88609 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lmx1bO88609 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lmx1bO88609 Chac1-201ENSMUST00000028780 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lmx1bO88609 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lmx1bO88609 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lmx1bO88609 Plk1-201ENSMUST00000033154 2199 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lmx1bO88609 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lmx1bO88609 Ccdc50-203ENSMUST00000100026 7089 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lmx1bO88609 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
Lmx1bO88609 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
Lmx1bO88609 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC13.33□□□□□ -0.28
Lmx1bO88609 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC13.33□□□□□ -0.28
Lmx1bO88609 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC13.33□□□□□ -0.28
Lmx1bO88609 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lmx1bO88609 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lmx1bO88609 Insr-201ENSMUST00000091291 9355 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lmx1bO88609 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lmx1bO88609 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Lmx1bO88609 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC13.33□□□□□ -0.28
Lmx1bO88609 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lmx1bO88609 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lmx1bO88609 Csnk1g1-212ENSMUST00000206048 2073 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
Lmx1bO88609 Pank3-201ENSMUST00000018990 7376 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lmx1bO88609 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lmx1bO88609 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lmx1bO88609 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
Lmx1bO88609 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC13.33□□□□□ -0.28
Lmx1bO88609 Usp35-201ENSMUST00000139582 4262 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Lmx1bO88609 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lmx1bO88609 Grm6-204ENSMUST00000171427 4330 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Lmx1bO88609 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lmx1bO88609 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC13.32□□□□□ -0.28
Lmx1bO88609 Plcb1-205ENSMUST00000131552 7202 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Lmx1bO88609 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lmx1bO88609 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Lmx1bO88609 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 74.1 ms