Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Gm10175-201ENSMUST00000086013 645 ntBASIC14.39□□□□□ -0.11
Msh4Q99MT2 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Msh4Q99MT2 Dnajc7-201ENSMUST00000014339 2330 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Msh4Q99MT2 Padi4-201ENSMUST00000026381 2316 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Msh4Q99MT2 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Msh4Q99MT2 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC14.39□□□□□ -0.11
Msh4Q99MT2 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Msh4Q99MT2 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Msh4Q99MT2 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC14.39□□□□□ -0.11
Msh4Q99MT2 Nfe2l1-201ENSMUST00000081775 4654 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Msh4Q99MT2 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC14.39□□□□□ -0.11
Msh4Q99MT2 AC119177.1-201ENSMUST00000227647 1332 ntBASIC14.39□□□□□ -0.11
Msh4Q99MT2 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC14.39□□□□□ -0.11
Msh4Q99MT2 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Msh4Q99MT2 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Msh4Q99MT2 Myrf-201ENSMUST00000088013 5674 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Msh4Q99MT2 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Msh4Q99MT2 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Msh4Q99MT2 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Msh4Q99MT2 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Msh4Q99MT2 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Msh4Q99MT2 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Msh4Q99MT2 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Msh4Q99MT2 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Msh4Q99MT2 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Msh4Q99MT2 Bloc1s5-203ENSMUST00000224902 612 ntBASIC14.38□□□□□ -0.11
Msh4Q99MT2 Cox7a2l-201ENSMUST00000025095 1078 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Msh4Q99MT2 Gm5867-201ENSMUST00000063197 592 ntBASIC14.38□□□□□ -0.11
Msh4Q99MT2 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Msh4Q99MT2 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Msh4Q99MT2 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Msh4Q99MT2 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Msh4Q99MT2 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Msh4Q99MT2 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
Msh4Q99MT2 Eif4ebp2-201ENSMUST00000020288 5784 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Msh4Q99MT2 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Msh4Q99MT2 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Msh4Q99MT2 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Msh4Q99MT2 Pde4dip-202ENSMUST00000090750 8376 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Msh4Q99MT2 Mybl1-201ENSMUST00000088658 4980 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Msh4Q99MT2 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Msh4Q99MT2 Tbc1d22b-201ENSMUST00000048677 3592 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Msh4Q99MT2 Rgs3-201ENSMUST00000065870 4698 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Msh4Q99MT2 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Msh4Q99MT2 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC14.37□□□□□ -0.11
Msh4Q99MT2 Arap2-201ENSMUST00000076623 7306 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Msh4Q99MT2 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC14.37□□□□□ -0.11
Msh4Q99MT2 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Msh4Q99MT2 Dhdds-203ENSMUST00000105886 1015 ntTSL 5 BASIC14.37□□□□□ -0.11
Msh4Q99MT2 Rhox2h-201ENSMUST00000115162 779 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Msh4Q99MT2 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC14.37□□□□□ -0.11
Msh4Q99MT2 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Msh4Q99MT2 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC14.37□□□□□ -0.11
Msh4Q99MT2 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC14.37□□□□□ -0.11
Msh4Q99MT2 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Msh4Q99MT2 Gm45504-201ENSMUST00000211407 2107 ntBASIC14.37□□□□□ -0.11
Msh4Q99MT2 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Msh4Q99MT2 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Msh4Q99MT2 Gm7901-201ENSMUST00000120430 1597 ntBASIC14.37□□□□□ -0.11
Msh4Q99MT2 Pax7-201ENSMUST00000030508 5854 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Msh4Q99MT2 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Msh4Q99MT2 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC14.37□□□□□ -0.11
Msh4Q99MT2 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Msh4Q99MT2 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Msh4Q99MT2 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Msh4Q99MT2 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Msh4Q99MT2 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Msh4Q99MT2 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Msh4Q99MT2 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Msh4Q99MT2 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Msh4Q99MT2 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Msh4Q99MT2 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Msh4Q99MT2 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
Msh4Q99MT2 Lancl3-201ENSMUST00000069763 3991 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Msh4Q99MT2 Pcdha1-201ENSMUST00000070797 5248 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Msh4Q99MT2 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC14.36□□□□□ -0.11
Msh4Q99MT2 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Msh4Q99MT2 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Msh4Q99MT2 Gm29361-201ENSMUST00000183323 2000 ntBASIC14.36□□□□□ -0.11
Msh4Q99MT2 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Msh4Q99MT2 Otud6b-201ENSMUST00000117268 3266 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Msh4Q99MT2 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Msh4Q99MT2 Syt17-204ENSMUST00000203796 2957 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Msh4Q99MT2 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Msh4Q99MT2 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Msh4Q99MT2 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Msh4Q99MT2 Gm8242-201ENSMUST00000193029 1420 ntBASIC14.36□□□□□ -0.11
Msh4Q99MT2 Gm16796-201ENSMUST00000126086 3172 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Msh4Q99MT2 Pigv-201ENSMUST00000062118 3979 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Msh4Q99MT2 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC14.36□□□□□ -0.11
Msh4Q99MT2 Lyrm1-203ENSMUST00000106517 1279 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Msh4Q99MT2 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Msh4Q99MT2 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC14.36□□□□□ -0.11
Msh4Q99MT2 Mras-202ENSMUST00000119472 1190 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Msh4Q99MT2 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC14.36□□□□□ -0.11
Msh4Q99MT2 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC14.36□□□□□ -0.11
Msh4Q99MT2 Mymx-202ENSMUST00000169137 616 ntAPPRIS P4 TSL 2 BASIC14.36□□□□□ -0.11
Msh4Q99MT2 Mir7036b-201ENSMUST00000184791 63 ntBASIC14.36□□□□□ -0.11
Msh4Q99MT2 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC14.36□□□□□ -0.11
Msh4Q99MT2 AC159295.1-201ENSMUST00000225326 940 ntBASIC14.36□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 101.3 ms