Protein–RNA interactions for Protein: Q3U827

Rnf180, E3 ubiquitin-protein ligase RNF180, mousemouse

Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf180Q3U827 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Rnf180Q3U827 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rnf180Q3U827 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rnf180Q3U827 Gm4858-202ENSMUST00000194595 1810 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Rnf180Q3U827 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Rnf180Q3U827 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Rnf180Q3U827 Gm12566-201ENSMUST00000121479 359 ntBASIC17.1■□□□□ 0.33
Rnf180Q3U827 Polr3c-202ENSMUST00000125183 923 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Rnf180Q3U827 Gm26464-201ENSMUST00000157094 305 ntBASIC17.1■□□□□ 0.33
Rnf180Q3U827 Gm28287-201ENSMUST00000186612 546 ntTSL 5 BASIC17.1■□□□□ 0.33
Rnf180Q3U827 Fcrl1-204ENSMUST00000191666 925 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rnf180Q3U827 Cryaa-201ENSMUST00000019192 1176 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Rnf180Q3U827 Gm8959-201ENSMUST00000213150 571 ntBASIC17.1■□□□□ 0.33
Rnf180Q3U827 AC154595.3-201ENSMUST00000224579 384 ntBASIC17.1■□□□□ 0.33
Rnf180Q3U827 Hbb-bs-201ENSMUST00000023934 628 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rnf180Q3U827 Olfr156-202ENSMUST00000079465 1099 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Rnf180Q3U827 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rnf180Q3U827 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rnf180Q3U827 Syce1-201ENSMUST00000026553 1460 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rnf180Q3U827 Pcna-201ENSMUST00000028817 1518 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rnf180Q3U827 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rnf180Q3U827 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Rnf180Q3U827 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rnf180Q3U827 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Rnf180Q3U827 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Rnf180Q3U827 Gm5953-201ENSMUST00000220644 2616 ntBASIC17.09■□□□□ 0.33
Rnf180Q3U827 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Rnf180Q3U827 Wfdc3-201ENSMUST00000103096 911 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Rnf180Q3U827 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC17.09■□□□□ 0.33
Rnf180Q3U827 Gm15376-201ENSMUST00000122258 783 ntBASIC17.09■□□□□ 0.33
Rnf180Q3U827 Gm13786-201ENSMUST00000122371 333 ntBASIC17.09■□□□□ 0.33
Rnf180Q3U827 Gm15501-201ENSMUST00000133910 849 ntTSL 3 BASIC17.09■□□□□ 0.33
Rnf180Q3U827 Gm11290-203ENSMUST00000147811 314 ntTSL 5 BASIC17.09■□□□□ 0.33
Rnf180Q3U827 Prss51-202ENSMUST00000165710 953 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Rnf180Q3U827 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC17.09■□□□□ 0.33
Rnf180Q3U827 Gm5850-201ENSMUST00000192923 1206 ntBASIC17.09■□□□□ 0.33
Rnf180Q3U827 Gm19208-201ENSMUST00000213861 912 ntBASIC17.09■□□□□ 0.33
Rnf180Q3U827 Aspdh-201ENSMUST00000035929 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Rnf180Q3U827 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Rnf180Q3U827 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Rnf180Q3U827 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Rnf180Q3U827 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Rnf180Q3U827 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Rnf180Q3U827 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC17.09■□□□□ 0.33
Rnf180Q3U827 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Rnf180Q3U827 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Rnf180Q3U827 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Rnf180Q3U827 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Rnf180Q3U827 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Rnf180Q3U827 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Rnf180Q3U827 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC17.08■□□□□ 0.33
Rnf180Q3U827 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Rnf180Q3U827 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Rnf180Q3U827 Gm6015-201ENSMUST00000217493 1586 ntBASIC17.08■□□□□ 0.32
Rnf180Q3U827 Igbp1b-201ENSMUST00000054786 1456 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Rnf180Q3U827 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Rnf180Q3U827 Tnnt3-217ENSMUST00000105957 1028 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
Rnf180Q3U827 Gm8213-201ENSMUST00000118191 441 ntBASIC17.08■□□□□ 0.32
Rnf180Q3U827 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Rnf180Q3U827 Rwdd3-209ENSMUST00000170781 1111 ntTSL 5 BASIC17.08■□□□□ 0.32
Rnf180Q3U827 1110038B12Rik-203ENSMUST00000173070 434 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Rnf180Q3U827 Gm4271-201ENSMUST00000174444 973 ntBASIC17.08■□□□□ 0.32
Rnf180Q3U827 1700120C14Rik-202ENSMUST00000187967 391 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Rnf180Q3U827 Gm6621-201ENSMUST00000193251 772 ntBASIC17.08■□□□□ 0.32
Rnf180Q3U827 9230020A06Rik-204ENSMUST00000215201 1116 ntTSL 5 BASIC17.08■□□□□ 0.32
Rnf180Q3U827 Gm8227-201ENSMUST00000223306 571 ntBASIC17.08■□□□□ 0.32
Rnf180Q3U827 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Rnf180Q3U827 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Rnf180Q3U827 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Rnf180Q3U827 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Rnf180Q3U827 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Rnf180Q3U827 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Rnf180Q3U827 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rnf180Q3U827 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC17.07■□□□□ 0.32
Rnf180Q3U827 Mecp2-203ENSMUST00000123362 1675 ntTSL 5 BASIC17.07■□□□□ 0.32
Rnf180Q3U827 Kir3dl1-202ENSMUST00000113105 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rnf180Q3U827 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC17.07■□□□□ 0.32
Rnf180Q3U827 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rnf180Q3U827 Gm6203-201ENSMUST00000209575 1342 ntBASIC17.07■□□□□ 0.32
Rnf180Q3U827 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Rnf180Q3U827 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rnf180Q3U827 Gm14017-201ENSMUST00000121934 386 ntBASIC17.07■□□□□ 0.32
Rnf180Q3U827 Sct-204ENSMUST00000211667 506 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
Rnf180Q3U827 Gm18556-201ENSMUST00000219748 1031 ntBASIC17.07■□□□□ 0.32
Rnf180Q3U827 Gm8598-201ENSMUST00000221184 836 ntBASIC17.07■□□□□ 0.32
Rnf180Q3U827 Rpl30-201ENSMUST00000009039 570 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rnf180Q3U827 Scrn3-202ENSMUST00000112050 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rnf180Q3U827 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Rnf180Q3U827 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rnf180Q3U827 Wac-201ENSMUST00000074919 3070 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Rnf180Q3U827 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Rnf180Q3U827 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rnf180Q3U827 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC17.06■□□□□ 0.32
Rnf180Q3U827 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Rnf180Q3U827 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC17.06■□□□□ 0.32
Rnf180Q3U827 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Rnf180Q3U827 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Rnf180Q3U827 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Rnf180Q3U827 Tmem55a-201ENSMUST00000029875 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Rnf180Q3U827 1500011K16Rik-201ENSMUST00000135091 800 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 51 ms