Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Nkx3-1P97436 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Nkx3-1P97436 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Nkx3-1P97436 Fbxo30-202ENSMUST00000129456 5060 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Nkx3-1P97436 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Nkx3-1P97436 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Nkx3-1P97436 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Nkx3-1P97436 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Nkx3-1P97436 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC12.73□□□□□ -0.37
Nkx3-1P97436 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC12.73□□□□□ -0.37
Nkx3-1P97436 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Nkx3-1P97436 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Nkx3-1P97436 Rab3a-204ENSMUST00000110093 1442 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Nkx3-1P97436 Tmem176b-203ENSMUST00000166247 1414 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Nkx3-1P97436 Gjb6-201ENSMUST00000039380 2105 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Nkx3-1P97436 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Nkx3-1P97436 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Nkx3-1P97436 St8sia2-201ENSMUST00000026896 5368 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Nkx3-1P97436 1700113H08Rik-201ENSMUST00000169849 1332 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Nkx3-1P97436 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Nkx3-1P97436 B9d1-201ENSMUST00000102657 817 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Nkx3-1P97436 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC12.73□□□□□ -0.37
Nkx3-1P97436 4930417O22Rik-201ENSMUST00000123249 1184 ntTSL 2 BASIC12.73□□□□□ -0.37
Nkx3-1P97436 Gldnos-201ENSMUST00000149237 841 ntTSL 2 BASIC12.73□□□□□ -0.37
Nkx3-1P97436 1700028E10Rik-205ENSMUST00000202024 924 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Nkx3-1P97436 Cgn-202ENSMUST00000107273 5016 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Nkx3-1P97436 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Nkx3-1P97436 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Nkx3-1P97436 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Nkx3-1P97436 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Nkx3-1P97436 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Nkx3-1P97436 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC12.73□□□□□ -0.37
Nkx3-1P97436 Col4a1-201ENSMUST00000033898 6615 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Nkx3-1P97436 Fbxo41-202ENSMUST00000161078 6562 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Nkx3-1P97436 Fam214b-204ENSMUST00000107958 3280 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Nkx3-1P97436 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC12.73□□□□□ -0.37
Nkx3-1P97436 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Nkx3-1P97436 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC12.73□□□□□ -0.37
Nkx3-1P97436 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Nkx3-1P97436 Pcdha1-201ENSMUST00000070797 5248 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Nkx3-1P97436 Gna13-201ENSMUST00000020930 6160 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Nkx3-1P97436 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Nkx3-1P97436 Prob1-201ENSMUST00000097619 3021 ntBASIC12.72□□□□□ -0.37
Nkx3-1P97436 Tnfrsf11a-201ENSMUST00000027559 5027 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Nkx3-1P97436 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Nkx3-1P97436 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Nkx3-1P97436 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Nkx3-1P97436 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC12.72□□□□□ -0.37
Nkx3-1P97436 Aifm1-202ENSMUST00000114945 2221 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Nkx3-1P97436 Elovl1-207ENSMUST00000167636 1340 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Nkx3-1P97436 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Nkx3-1P97436 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Nkx3-1P97436 Pfdn6-204ENSMUST00000174048 560 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
Nkx3-1P97436 Gm37596-201ENSMUST00000193565 1021 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
Nkx3-1P97436 Cartpt-201ENSMUST00000022150 827 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Nkx3-1P97436 Gm9063-201ENSMUST00000223299 582 ntBASIC12.72□□□□□ -0.37
Nkx3-1P97436 Cartpt-202ENSMUST00000224142 1238 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
Nkx3-1P97436 AC140375.2-201ENSMUST00000225283 584 ntBASIC12.72□□□□□ -0.37
Nkx3-1P97436 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Nkx3-1P97436 Gstp2-201ENSMUST00000042700 770 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Nkx3-1P97436 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Nkx3-1P97436 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Nkx3-1P97436 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Nkx3-1P97436 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Nkx3-1P97436 Snx19-201ENSMUST00000164099 5762 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Nkx3-1P97436 Gemin5-202ENSMUST00000102711 4919 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Nkx3-1P97436 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Nkx3-1P97436 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Nkx3-1P97436 Gm27528-202ENSMUST00000222916 2012 ntBASIC12.72□□□□□ -0.37
Nkx3-1P97436 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Nkx3-1P97436 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Nkx3-1P97436 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC12.72□□□□□ -0.37
Nkx3-1P97436 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Nkx3-1P97436 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Nkx3-1P97436 Tmem269-202ENSMUST00000212054 1504 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Nkx3-1P97436 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Nkx3-1P97436 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Nkx3-1P97436 AC163637.1-201ENSMUST00000215491 1894 ntBASIC12.72□□□□□ -0.37
Nkx3-1P97436 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Nkx3-1P97436 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Nkx3-1P97436 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Nkx3-1P97436 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Nkx3-1P97436 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Nkx3-1P97436 Rsbn1l-201ENSMUST00000036489 5550 ntAPPRIS P2 TSL 5 BASIC12.71□□□□□ -0.37
Nkx3-1P97436 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Nkx3-1P97436 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC12.71□□□□□ -0.37
Nkx3-1P97436 Serhl-201ENSMUST00000078218 1371 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Nkx3-1P97436 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Nkx3-1P97436 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Nkx3-1P97436 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Nkx3-1P97436 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Nkx3-1P97436 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Nkx3-1P97436 Chchd5-201ENSMUST00000035481 1325 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Nkx3-1P97436 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC12.71□□□□□ -0.37
Nkx3-1P97436 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Nkx3-1P97436 Foxp2-207ENSMUST00000115477 6760 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
Nkx3-1P97436 Mtif3-203ENSMUST00000110564 1257 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Nkx3-1P97436 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Nkx3-1P97436 Gm11424-201ENSMUST00000121929 829 ntBASIC12.71□□□□□ -0.37
Nkx3-1P97436 Gm7030-203ENSMUST00000173322 913 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 28.8 ms