Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sox3P53784 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sox3P53784 Crb2-201ENSMUST00000050372 6372 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Sox3P53784 CT025626.1-201ENSMUST00000223735 1455 ntBASIC14.17□□□□□ -0.14
Sox3P53784 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sox3P53784 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sox3P53784 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sox3P53784 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Sox3P53784 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Sox3P53784 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Sox3P53784 Brd2-203ENSMUST00000114242 4483 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sox3P53784 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Sox3P53784 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC14.16□□□□□ -0.14
Sox3P53784 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sox3P53784 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Sox3P53784 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Sox3P53784 Gm38318-201ENSMUST00000195769 1706 ntBASIC14.16□□□□□ -0.14
Sox3P53784 Gm3045-201ENSMUST00000212844 1825 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Sox3P53784 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Sox3P53784 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Sox3P53784 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Sox3P53784 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Sox3P53784 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC14.16□□□□□ -0.14
Sox3P53784 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC14.16□□□□□ -0.14
Sox3P53784 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC14.16□□□□□ -0.14
Sox3P53784 Gm8344-201ENSMUST00000119813 856 ntBASIC14.16□□□□□ -0.14
Sox3P53784 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
Sox3P53784 Gldnos-201ENSMUST00000149237 841 ntTSL 2 BASIC14.16□□□□□ -0.14
Sox3P53784 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sox3P53784 Styxl1-207ENSMUST00000177559 1236 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Sox3P53784 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC14.16□□□□□ -0.14
Sox3P53784 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC14.16□□□□□ -0.14
Sox3P53784 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Sox3P53784 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sox3P53784 Hs3st3a1-201ENSMUST00000058652 3939 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sox3P53784 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
Sox3P53784 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
Sox3P53784 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC14.16□□□□□ -0.14
Sox3P53784 Sox1ot-202ENSMUST00000186174 7420 ntTSL 5 BASIC14.16□□□□□ -0.14
Sox3P53784 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sox3P53784 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sox3P53784 Rgl1-203ENSMUST00000111859 5092 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Sox3P53784 Fgfr3-203ENSMUST00000114411 4225 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Sox3P53784 Adora2a-201ENSMUST00000105420 2596 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
Sox3P53784 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sox3P53784 Mef2d-204ENSMUST00000119251 3488 ntTSL 5 BASIC14.16□□□□□ -0.14
Sox3P53784 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Sox3P53784 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC14.15□□□□□ -0.14
Sox3P53784 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC14.15□□□□□ -0.14
Sox3P53784 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Sox3P53784 Bri3bp-201ENSMUST00000049040 6473 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sox3P53784 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Sox3P53784 Tmpo-202ENSMUST00000072239 3533 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Sox3P53784 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sox3P53784 Gm37912-201ENSMUST00000191895 3076 ntBASIC14.15□□□□□ -0.14
Sox3P53784 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC14.15□□□□□ -0.14
Sox3P53784 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Sox3P53784 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sox3P53784 AC132265.1-201ENSMUST00000219233 1665 ntBASIC14.15□□□□□ -0.14
Sox3P53784 Nudt18-203ENSMUST00000228768 1578 ntBASIC14.15□□□□□ -0.14
Sox3P53784 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sox3P53784 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Sox3P53784 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC14.15□□□□□ -0.14
Sox3P53784 2410004P03Rik-203ENSMUST00000190691 953 ntTSL 2 BASIC14.15□□□□□ -0.14
Sox3P53784 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Sox3P53784 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sox3P53784 Gm2423-201ENSMUST00000074863 733 ntBASIC14.15□□□□□ -0.14
Sox3P53784 G630022F23Rik-201ENSMUST00000202923 3627 ntBASIC14.15□□□□□ -0.14
Sox3P53784 Exoc6-201ENSMUST00000066439 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sox3P53784 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sox3P53784 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sox3P53784 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sox3P53784 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sox3P53784 Shroom3-203ENSMUST00000113055 6765 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sox3P53784 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sox3P53784 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sox3P53784 Gm11190-201ENSMUST00000132487 3414 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Sox3P53784 Rspo4-201ENSMUST00000042217 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sox3P53784 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sox3P53784 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC14.15□□□□□ -0.14
Sox3P53784 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.15
Sox3P53784 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
Sox3P53784 St6gal2-201ENSMUST00000025000 6066 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Sox3P53784 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sox3P53784 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Sox3P53784 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Sox3P53784 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sox3P53784 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC14.14□□□□□ -0.15
Sox3P53784 Gm12151-201ENSMUST00000121374 290 ntBASIC14.14□□□□□ -0.15
Sox3P53784 Kxd1-204ENSMUST00000121623 884 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Sox3P53784 Abhd11os-201ENSMUST00000136022 604 ntTSL 2 BASIC14.14□□□□□ -0.15
Sox3P53784 Gtpbp10-211ENSMUST00000198799 648 ntBASIC14.14□□□□□ -0.15
Sox3P53784 4930593C16Rik-202ENSMUST00000214011 714 ntTSL 5 BASIC14.14□□□□□ -0.15
Sox3P53784 Kxd1-201ENSMUST00000093456 1216 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Sox3P53784 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sox3P53784 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sox3P53784 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sox3P53784 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC14.14□□□□□ -0.15
Sox3P53784 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC14.14□□□□□ -0.15
Sox3P53784 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 37.5 ms