Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Sdc1P18828 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sdc1P18828 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC12.11□□□□□ -0.47
Sdc1P18828 Erg-203ENSMUST00000113848 2139 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Sdc1P18828 Fnbp1-209ENSMUST00000113562 4515 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Sdc1P18828 Gad2-201ENSMUST00000028123 5744 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sdc1P18828 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sdc1P18828 Serinc5-201ENSMUST00000049488 5366 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sdc1P18828 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Sdc1P18828 Slc5a2-202ENSMUST00000118169 2277 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sdc1P18828 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sdc1P18828 Usf1-208ENSMUST00000161241 2167 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sdc1P18828 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sdc1P18828 Sema6c-202ENSMUST00000090823 4029 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sdc1P18828 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sdc1P18828 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sdc1P18828 Spag1-201ENSMUST00000047348 3646 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sdc1P18828 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sdc1P18828 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sdc1P18828 P2ry2-201ENSMUST00000037540 3011 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sdc1P18828 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sdc1P18828 Tmc8-202ENSMUST00000106334 2644 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sdc1P18828 Shisa3-201ENSMUST00000087241 3760 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sdc1P18828 Spsb1-201ENSMUST00000038562 3092 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sdc1P18828 Srsf1-205ENSMUST00000139129 5362 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sdc1P18828 Adamts16-201ENSMUST00000080145 4981 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sdc1P18828 Ptn-202ENSMUST00000201321 2558 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Sdc1P18828 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Sdc1P18828 Slc5a6-202ENSMUST00000114668 3436 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sdc1P18828 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Sdc1P18828 Cdc73-201ENSMUST00000018337 11586 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sdc1P18828 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sdc1P18828 Dysf-214ENSMUST00000204354 6432 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
Sdc1P18828 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sdc1P18828 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Sdc1P18828 Myt1l-204ENSMUST00000218198 2735 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Sdc1P18828 Cacna2d2-204ENSMUST00000166799 3474 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Sdc1P18828 Arnt-201ENSMUST00000015666 2603 ntTSL 5 BASIC12.1□□□□□ -0.47
Sdc1P18828 Samd11-202ENSMUST00000217934 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sdc1P18828 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sdc1P18828 Pax7-201ENSMUST00000030508 5854 ntAPPRIS P2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sdc1P18828 Tmem169-201ENSMUST00000027380 2928 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sdc1P18828 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC12.1□□□□□ -0.47
Sdc1P18828 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC12.1□□□□□ -0.47
Sdc1P18828 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sdc1P18828 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sdc1P18828 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
Sdc1P18828 Adamts8-201ENSMUST00000068135 3631 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sdc1P18828 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Sdc1P18828 Lrrc56-202ENSMUST00000070458 2502 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sdc1P18828 Mdga2-201ENSMUST00000037181 9833 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sdc1P18828 5730409E04Rik-201ENSMUST00000097886 2886 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sdc1P18828 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sdc1P18828 Ncor2-206ENSMUST00000111402 8862 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Sdc1P18828 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sdc1P18828 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sdc1P18828 Csrnp1-201ENSMUST00000035101 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sdc1P18828 Olfml2a-201ENSMUST00000057279 5579 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sdc1P18828 Kcp-201ENSMUST00000078112 4775 ntTSL 5 BASIC12.1□□□□□ -0.47
Sdc1P18828 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Sdc1P18828 Diaph1-202ENSMUST00000080033 4378 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sdc1P18828 Irak2-202ENSMUST00000089022 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sdc1P18828 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Sdc1P18828 AC158633.2-201ENSMUST00000222959 6046 ntTSL 5 BASIC12.09□□□□□ -0.47
Sdc1P18828 Hspa12b-201ENSMUST00000099349 3413 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sdc1P18828 Nek8-201ENSMUST00000017549 2809 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sdc1P18828 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Sdc1P18828 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Sdc1P18828 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Sdc1P18828 Pgghg-201ENSMUST00000079403 2981 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sdc1P18828 Gm10313-201ENSMUST00000095320 1002 ntBASIC12.09□□□□□ -0.47
Sdc1P18828 Map2k7-206ENSMUST00000110998 3497 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sdc1P18828 Bcl11b-201ENSMUST00000066060 8111 ntAPPRIS P4 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sdc1P18828 Lpar2-202ENSMUST00000164890 5800 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sdc1P18828 Tbc1d1-201ENSMUST00000043893 6471 ntAPPRIS ALT2 TSL 2 BASIC12.09□□□□□ -0.47
Sdc1P18828 Adam22-203ENSMUST00000088744 9245 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Sdc1P18828 Zmym4-201ENSMUST00000106108 7102 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sdc1P18828 Tmem8b-202ENSMUST00000107865 4775 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sdc1P18828 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Sdc1P18828 Inpp4a-209ENSMUST00000140264 3676 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Sdc1P18828 Wac-201ENSMUST00000074919 3070 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Sdc1P18828 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC12.09□□□□□ -0.47
Sdc1P18828 Hdgfl2-210ENSMUST00000225843 2238 ntAPPRIS ALT2 BASIC12.09□□□□□ -0.47
Sdc1P18828 Grin2c-201ENSMUST00000003351 4279 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.47
Sdc1P18828 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC12.08□□□□□ -0.47
Sdc1P18828 Gm44065-201ENSMUST00000203184 3527 ntBASIC12.08□□□□□ -0.47
Sdc1P18828 Cand1-201ENSMUST00000020315 7766 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.47
Sdc1P18828 Sh2b1-206ENSMUST00000205889 3011 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.47
Sdc1P18828 Hif1a-201ENSMUST00000021530 4724 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sdc1P18828 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sdc1P18828 Gm34419-201ENSMUST00000211383 1387 ntTSL 5 BASIC12.08□□□□□ -0.48
Sdc1P18828 Clcn4-203ENSMUST00000210061 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sdc1P18828 Morc4-202ENSMUST00000087401 3862 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sdc1P18828 AC126250.1-201ENSMUST00000228343 1768 ntBASIC12.08□□□□□ -0.48
Sdc1P18828 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sdc1P18828 Gm14168-201ENSMUST00000144818 2197 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Sdc1P18828 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sdc1P18828 4921513I03Rik-201ENSMUST00000056994 1534 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Sdc1P18828 5730409E04Rik-202ENSMUST00000164362 2855 ntAPPRIS P1 TSL 3 BASIC12.08□□□□□ -0.48
Sdc1P18828 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC12.08□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 44.1 ms