Protein–RNA interactions for Protein: O70209

Pdlim3, PDZ and LIM domain protein 3, mousemouse

Known RBP Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pdlim3O70209 Cadps2-213ENSMUST00000166458 4598 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
Pdlim3O70209 Slc8a2-202ENSMUST00000211649 5261 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Pdlim3O70209 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Pdlim3O70209 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Pdlim3O70209 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Pdlim3O70209 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
Pdlim3O70209 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Pdlim3O70209 Gm12895-201ENSMUST00000122214 226 ntBASIC13.39□□□□□ -0.27
Pdlim3O70209 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Pdlim3O70209 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC13.39□□□□□ -0.27
Pdlim3O70209 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC13.39□□□□□ -0.27
Pdlim3O70209 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Pdlim3O70209 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Pdlim3O70209 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Pdlim3O70209 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Pdlim3O70209 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Pdlim3O70209 Rbfox2-207ENSMUST00000227533 1041 ntBASIC13.39□□□□□ -0.27
Pdlim3O70209 Nyap1-201ENSMUST00000061789 3912 ntAPPRIS P3 TSL 5 BASIC13.39□□□□□ -0.27
Pdlim3O70209 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Pdlim3O70209 Slc22a18-202ENSMUST00000105917 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Pdlim3O70209 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Pdlim3O70209 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Pdlim3O70209 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Pdlim3O70209 Col3a1-201ENSMUST00000087883 5564 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Pdlim3O70209 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC13.39□□□□□ -0.27
Pdlim3O70209 Phka1-201ENSMUST00000043596 5938 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Pdlim3O70209 Gpr137c-201ENSMUST00000146150 3917 ntAPPRIS P2 TSL 5 BASIC13.39□□□□□ -0.27
Pdlim3O70209 Ralyl-206ENSMUST00000193117 2933 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
Pdlim3O70209 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Pdlim3O70209 Lzts1-201ENSMUST00000037049 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Pdlim3O70209 Dimt1-201ENSMUST00000022203 2051 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Pdlim3O70209 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC13.38□□□□□ -0.27
Pdlim3O70209 Smo-201ENSMUST00000001812 3779 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Pdlim3O70209 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC13.38□□□□□ -0.27
Pdlim3O70209 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Pdlim3O70209 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Pdlim3O70209 Tmed8-201ENSMUST00000037418 7409 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Pdlim3O70209 Arhgef40-201ENSMUST00000093813 5621 ntAPPRIS P4 TSL 1 (best) BASIC13.38□□□□□ -0.27
Pdlim3O70209 Gm12644-201ENSMUST00000119935 606 ntBASIC13.38□□□□□ -0.27
Pdlim3O70209 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Pdlim3O70209 AC164567.1-201ENSMUST00000219185 960 ntBASIC13.38□□□□□ -0.27
Pdlim3O70209 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC13.38□□□□□ -0.27
Pdlim3O70209 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Pdlim3O70209 Hic2-201ENSMUST00000090190 6354 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Pdlim3O70209 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Pdlim3O70209 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
Pdlim3O70209 Gnl3-201ENSMUST00000037739 1947 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Pdlim3O70209 Rnf103-203ENSMUST00000114179 2671 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
Pdlim3O70209 Tsc2-217ENSMUST00000227745 5598 ntAPPRIS ALT2 BASIC13.38□□□□□ -0.27
Pdlim3O70209 Ubc-203ENSMUST00000156249 2581 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
Pdlim3O70209 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Pdlim3O70209 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Pdlim3O70209 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Pdlim3O70209 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Pdlim3O70209 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC13.38□□□□□ -0.27
Pdlim3O70209 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Pdlim3O70209 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Pdlim3O70209 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Pdlim3O70209 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Pdlim3O70209 Kcnk6-201ENSMUST00000085818 4084 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Pdlim3O70209 Dennd5b-201ENSMUST00000111557 9831 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
Pdlim3O70209 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC13.38□□□□□ -0.27
Pdlim3O70209 Gm33195-201ENSMUST00000220827 2337 ntTSL 5 BASIC13.38□□□□□ -0.27
Pdlim3O70209 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Pdlim3O70209 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Pdlim3O70209 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Pdlim3O70209 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Pdlim3O70209 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
Pdlim3O70209 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Pdlim3O70209 Ablim1-209ENSMUST00000111546 2267 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
Pdlim3O70209 Ctu2-201ENSMUST00000116412 3066 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Pdlim3O70209 Tuft1-203ENSMUST00000196655 2156 ntTSL 5 BASIC13.37□□□□□ -0.27
Pdlim3O70209 Gm5184-201ENSMUST00000220417 1702 ntBASIC13.37□□□□□ -0.27
Pdlim3O70209 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC13.37□□□□□ -0.27
Pdlim3O70209 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Pdlim3O70209 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Pdlim3O70209 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Pdlim3O70209 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Pdlim3O70209 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Pdlim3O70209 AC154471.1-201ENSMUST00000224418 436 ntBASIC13.37□□□□□ -0.27
Pdlim3O70209 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Pdlim3O70209 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC13.37□□□□□ -0.27
Pdlim3O70209 Thumpd1-201ENSMUST00000033236 2689 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Pdlim3O70209 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Pdlim3O70209 Prox1-201ENSMUST00000010319 3285 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Pdlim3O70209 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC13.37□□□□□ -0.27
Pdlim3O70209 Grik4-202ENSMUST00000114865 5887 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Pdlim3O70209 Elmsan1-202ENSMUST00000110294 7156 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Pdlim3O70209 Rtkn-202ENSMUST00000087938 3080 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
Pdlim3O70209 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Pdlim3O70209 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC13.37□□□□□ -0.27
Pdlim3O70209 Kif7-204ENSMUST00000184137 4093 ntAPPRIS P3 TSL 5 BASIC13.37□□□□□ -0.27
Pdlim3O70209 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Pdlim3O70209 Lman2-201ENSMUST00000021940 4315 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Pdlim3O70209 Ftcd-201ENSMUST00000001183 1933 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Pdlim3O70209 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
Pdlim3O70209 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Pdlim3O70209 Ccp110-202ENSMUST00000106557 5073 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Pdlim3O70209 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Pdlim3O70209 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 29.7 ms