Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Cpsf1Q9EPU4 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC20.23■□□□□ 0.83
Cpsf1Q9EPU4 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Cpsf1Q9EPU4 Elovl1-201ENSMUST00000006557 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Cpsf1Q9EPU4 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Cpsf1Q9EPU4 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Cpsf1Q9EPU4 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Cpsf1Q9EPU4 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Cpsf1Q9EPU4 Gbgt1-203ENSMUST00000163121 1335 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Cpsf1Q9EPU4 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cpsf1Q9EPU4 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC20.22■□□□□ 0.83
Cpsf1Q9EPU4 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cpsf1Q9EPU4 Rspo4-201ENSMUST00000042217 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cpsf1Q9EPU4 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cpsf1Q9EPU4 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cpsf1Q9EPU4 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC20.22■□□□□ 0.83
Cpsf1Q9EPU4 Arhgef33-209ENSMUST00000225223 714 ntBASIC20.22■□□□□ 0.83
Cpsf1Q9EPU4 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cpsf1Q9EPU4 Gale-201ENSMUST00000102540 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cpsf1Q9EPU4 Gm5320-201ENSMUST00000207163 1519 ntBASIC20.22■□□□□ 0.83
Cpsf1Q9EPU4 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Cpsf1Q9EPU4 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC20.22■□□□□ 0.83
Cpsf1Q9EPU4 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cpsf1Q9EPU4 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cpsf1Q9EPU4 Syt7-204ENSMUST00000223586 1344 ntBASIC20.22■□□□□ 0.83
Cpsf1Q9EPU4 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Cpsf1Q9EPU4 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cpsf1Q9EPU4 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cpsf1Q9EPU4 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cpsf1Q9EPU4 Tssk4-202ENSMUST00000164809 1686 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Cpsf1Q9EPU4 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cpsf1Q9EPU4 Gm7488-201ENSMUST00000117148 684 ntBASIC20.21■□□□□ 0.83
Cpsf1Q9EPU4 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cpsf1Q9EPU4 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC20.21■□□□□ 0.83
Cpsf1Q9EPU4 Pxn-213ENSMUST00000202564 2126 ntTSL 5 BASIC20.21■□□□□ 0.83
Cpsf1Q9EPU4 Ins2-209ENSMUST00000210288 918 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Cpsf1Q9EPU4 Gm7730-201ENSMUST00000212486 454 ntBASIC20.21■□□□□ 0.83
Cpsf1Q9EPU4 Tex12-202ENSMUST00000217236 1003 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cpsf1Q9EPU4 Pim2-204ENSMUST00000223553 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cpsf1Q9EPU4 Calml4-201ENSMUST00000034777 864 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cpsf1Q9EPU4 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cpsf1Q9EPU4 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cpsf1Q9EPU4 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cpsf1Q9EPU4 Elovl1-207ENSMUST00000167636 1340 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cpsf1Q9EPU4 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cpsf1Q9EPU4 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cpsf1Q9EPU4 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Cpsf1Q9EPU4 Cdx4-201ENSMUST00000033689 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cpsf1Q9EPU4 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC20.2■□□□□ 0.83
Cpsf1Q9EPU4 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cpsf1Q9EPU4 Rgs19-203ENSMUST00000108771 1110 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Cpsf1Q9EPU4 Rgs19-205ENSMUST00000108776 1216 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cpsf1Q9EPU4 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC20.2■□□□□ 0.82
Cpsf1Q9EPU4 Gm3436-201ENSMUST00000179930 840 ntBASIC20.2■□□□□ 0.82
Cpsf1Q9EPU4 Bccip-201ENSMUST00000033282 1244 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cpsf1Q9EPU4 Pdlim7-203ENSMUST00000069968 1006 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Cpsf1Q9EPU4 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Cpsf1Q9EPU4 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cpsf1Q9EPU4 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cpsf1Q9EPU4 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
Cpsf1Q9EPU4 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cpsf1Q9EPU4 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC20.2■□□□□ 0.82
Cpsf1Q9EPU4 Gm9768-201ENSMUST00000206007 2861 ntBASIC20.2■□□□□ 0.82
Cpsf1Q9EPU4 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Cpsf1Q9EPU4 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC20.2■□□□□ 0.82
Cpsf1Q9EPU4 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cpsf1Q9EPU4 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Cpsf1Q9EPU4 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cpsf1Q9EPU4 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cpsf1Q9EPU4 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cpsf1Q9EPU4 B9d1-201ENSMUST00000102657 817 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cpsf1Q9EPU4 Gm22189-201ENSMUST00000103822 86 ntBASIC20.19■□□□□ 0.82
Cpsf1Q9EPU4 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cpsf1Q9EPU4 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC20.19■□□□□ 0.82
Cpsf1Q9EPU4 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC20.19■□□□□ 0.82
Cpsf1Q9EPU4 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC20.19■□□□□ 0.82
Cpsf1Q9EPU4 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
Cpsf1Q9EPU4 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Cpsf1Q9EPU4 4930527A07Rik-201ENSMUST00000130677 559 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Cpsf1Q9EPU4 Gm46209-201ENSMUST00000217912 553 ntBASIC20.19■□□□□ 0.82
Cpsf1Q9EPU4 Armc12-201ENSMUST00000025060 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cpsf1Q9EPU4 Tlcd2-201ENSMUST00000043598 1153 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cpsf1Q9EPU4 Itfg2-206ENSMUST00000203374 1394 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
Cpsf1Q9EPU4 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Cpsf1Q9EPU4 Sirt5-207ENSMUST00000221515 1793 ntTSL 5 BASIC20.19■□□□□ 0.82
Cpsf1Q9EPU4 Krt2-201ENSMUST00000023712 2613 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cpsf1Q9EPU4 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cpsf1Q9EPU4 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cpsf1Q9EPU4 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
Cpsf1Q9EPU4 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cpsf1Q9EPU4 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cpsf1Q9EPU4 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Cpsf1Q9EPU4 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Cpsf1Q9EPU4 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC20.19■□□□□ 0.82
Cpsf1Q9EPU4 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Cpsf1Q9EPU4 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Cpsf1Q9EPU4 Gm15957-201ENSMUST00000118893 974 ntBASIC20.19■□□□□ 0.82
Cpsf1Q9EPU4 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC20.19■□□□□ 0.82
Cpsf1Q9EPU4 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC20.19■□□□□ 0.82
Cpsf1Q9EPU4 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 33.8 ms