Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Sgpl1-202ENSMUST00000122259 4102 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ushbp1Q8R370 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ushbp1Q8R370 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ushbp1Q8R370 Adora2a-201ENSMUST00000105420 2596 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
Ushbp1Q8R370 Ttc22-201ENSMUST00000047922 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ushbp1Q8R370 Tmem143-203ENSMUST00000209350 2466 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Ushbp1Q8R370 Gm12522-201ENSMUST00000142833 2439 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Ushbp1Q8R370 Malt1-201ENSMUST00000049248 5073 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ushbp1Q8R370 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC16.56■□□□□ 0.24
Ushbp1Q8R370 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ushbp1Q8R370 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC16.55■□□□□ 0.24
Ushbp1Q8R370 Fbxl12-205ENSMUST00000140702 1555 ntBASIC16.55■□□□□ 0.24
Ushbp1Q8R370 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ushbp1Q8R370 Galnt13-202ENSMUST00000112634 7639 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Ushbp1Q8R370 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ushbp1Q8R370 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Ushbp1Q8R370 Pqbp1-202ENSMUST00000115654 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ushbp1Q8R370 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Ushbp1Q8R370 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ushbp1Q8R370 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ushbp1Q8R370 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Ushbp1Q8R370 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
Ushbp1Q8R370 Parm1-201ENSMUST00000040576 5068 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ushbp1Q8R370 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Ushbp1Q8R370 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Ushbp1Q8R370 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC16.55■□□□□ 0.24
Ushbp1Q8R370 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Ushbp1Q8R370 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ushbp1Q8R370 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
Ushbp1Q8R370 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC16.55■□□□□ 0.24
Ushbp1Q8R370 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Ushbp1Q8R370 Gm44335-201ENSMUST00000196879 141 ntBASIC16.55■□□□□ 0.24
Ushbp1Q8R370 Gm44297-201ENSMUST00000198304 141 ntBASIC16.55■□□□□ 0.24
Ushbp1Q8R370 Gm44346-201ENSMUST00000198851 141 ntBASIC16.55■□□□□ 0.24
Ushbp1Q8R370 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC16.55■□□□□ 0.24
Ushbp1Q8R370 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ushbp1Q8R370 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ushbp1Q8R370 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ushbp1Q8R370 Plcb1-205ENSMUST00000131552 7202 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Ushbp1Q8R370 Map7d1-203ENSMUST00000122129 3249 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
Ushbp1Q8R370 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC16.55■□□□□ 0.24
Ushbp1Q8R370 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Ushbp1Q8R370 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
Ushbp1Q8R370 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
Ushbp1Q8R370 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Ushbp1Q8R370 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Ushbp1Q8R370 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Ushbp1Q8R370 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ushbp1Q8R370 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ushbp1Q8R370 Adam11-201ENSMUST00000068150 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ushbp1Q8R370 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Ushbp1Q8R370 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ushbp1Q8R370 Gm45133-201ENSMUST00000207548 2773 ntBASIC16.55■□□□□ 0.24
Ushbp1Q8R370 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ushbp1Q8R370 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Ushbp1Q8R370 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ushbp1Q8R370 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ushbp1Q8R370 AC025913.2-201ENSMUST00000220136 1766 ntBASIC16.54■□□□□ 0.24
Ushbp1Q8R370 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
Ushbp1Q8R370 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Ushbp1Q8R370 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ushbp1Q8R370 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Ushbp1Q8R370 Gm26702-201ENSMUST00000181730 4570 ntTSL 5 BASIC16.54■□□□□ 0.24
Ushbp1Q8R370 Mrpl55-204ENSMUST00000108786 757 ntTSL 2 BASIC16.54■□□□□ 0.24
Ushbp1Q8R370 Gm13365-201ENSMUST00000121188 973 ntBASIC16.54■□□□□ 0.24
Ushbp1Q8R370 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC16.54■□□□□ 0.24
Ushbp1Q8R370 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC16.54■□□□□ 0.24
Ushbp1Q8R370 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
Ushbp1Q8R370 Smdt1-201ENSMUST00000023086 705 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ushbp1Q8R370 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ushbp1Q8R370 Atg4d-201ENSMUST00000065005 5951 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ushbp1Q8R370 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC16.54■□□□□ 0.24
Ushbp1Q8R370 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Ushbp1Q8R370 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ushbp1Q8R370 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
Ushbp1Q8R370 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ushbp1Q8R370 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC16.53■□□□□ 0.24
Ushbp1Q8R370 9130024F11Rik-202ENSMUST00000185204 2628 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Ushbp1Q8R370 Cyp4f37-201ENSMUST00000077639 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ushbp1Q8R370 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ushbp1Q8R370 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ushbp1Q8R370 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ushbp1Q8R370 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC16.53■□□□□ 0.24
Ushbp1Q8R370 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Ushbp1Q8R370 Cdon-202ENSMUST00000119129 7503 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
Ushbp1Q8R370 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC16.53■□□□□ 0.24
Ushbp1Q8R370 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Ushbp1Q8R370 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Ushbp1Q8R370 Gm5312-201ENSMUST00000203728 547 ntBASIC16.53■□□□□ 0.24
Ushbp1Q8R370 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
Ushbp1Q8R370 Gm20949-201ENSMUST00000206478 952 ntBASIC16.53■□□□□ 0.24
Ushbp1Q8R370 Gm45747-201ENSMUST00000212203 999 ntBASIC16.53■□□□□ 0.24
Ushbp1Q8R370 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC16.53■□□□□ 0.24
Ushbp1Q8R370 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ushbp1Q8R370 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ushbp1Q8R370 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ushbp1Q8R370 Fdx1-202ENSMUST00000214013 2759 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Ushbp1Q8R370 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
Ushbp1Q8R370 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
Ushbp1Q8R370 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 45.6 ms