Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
Brf1Q8CFK2 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Brf1Q8CFK2 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
Brf1Q8CFK2 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Brf1Q8CFK2 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Brf1Q8CFK2 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Brf1Q8CFK2 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
Brf1Q8CFK2 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Brf1Q8CFK2 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Brf1Q8CFK2 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Brf1Q8CFK2 Adam23-204ENSMUST00000114103 2655 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
Brf1Q8CFK2 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Brf1Q8CFK2 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Brf1Q8CFK2 Aig1-202ENSMUST00000105534 617 ntTSL 5 BASIC17.84■□□□□ 0.45
Brf1Q8CFK2 Il15ra-206ENSMUST00000114834 784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Brf1Q8CFK2 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC17.84■□□□□ 0.45
Brf1Q8CFK2 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC17.84■□□□□ 0.45
Brf1Q8CFK2 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Brf1Q8CFK2 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Brf1Q8CFK2 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
Brf1Q8CFK2 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC17.84■□□□□ 0.45
Brf1Q8CFK2 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Brf1Q8CFK2 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC17.84■□□□□ 0.45
Brf1Q8CFK2 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Brf1Q8CFK2 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC17.84■□□□□ 0.45
Brf1Q8CFK2 Gatad2a-203ENSMUST00000177851 5007 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
Brf1Q8CFK2 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Brf1Q8CFK2 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Brf1Q8CFK2 Padi4-201ENSMUST00000026381 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Brf1Q8CFK2 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Brf1Q8CFK2 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Brf1Q8CFK2 Commd5-202ENSMUST00000109793 920 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
Brf1Q8CFK2 Mtif3-203ENSMUST00000110564 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Brf1Q8CFK2 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Brf1Q8CFK2 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC17.83■□□□□ 0.44
Brf1Q8CFK2 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC17.83■□□□□ 0.44
Brf1Q8CFK2 Gm15483-201ENSMUST00000120338 456 ntBASIC17.83■□□□□ 0.44
Brf1Q8CFK2 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Brf1Q8CFK2 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Brf1Q8CFK2 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Brf1Q8CFK2 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Brf1Q8CFK2 Mettl2-201ENSMUST00000021030 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Brf1Q8CFK2 Kdm8-201ENSMUST00000033010 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Brf1Q8CFK2 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Brf1Q8CFK2 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Brf1Q8CFK2 Cadm3-202ENSMUST00000111220 5155 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Brf1Q8CFK2 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Brf1Q8CFK2 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Brf1Q8CFK2 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC17.83■□□□□ 0.44
Brf1Q8CFK2 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC17.83■□□□□ 0.44
Brf1Q8CFK2 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Brf1Q8CFK2 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Brf1Q8CFK2 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Brf1Q8CFK2 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Brf1Q8CFK2 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Brf1Q8CFK2 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Brf1Q8CFK2 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Brf1Q8CFK2 Gm13233-201ENSMUST00000118760 1443 ntBASIC17.82■□□□□ 0.44
Brf1Q8CFK2 Gm13244-201ENSMUST00000118855 1446 ntBASIC17.82■□□□□ 0.44
Brf1Q8CFK2 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Brf1Q8CFK2 Fbxo30-202ENSMUST00000129456 5060 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Brf1Q8CFK2 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Brf1Q8CFK2 Glg1-204ENSMUST00000169020 7021 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Brf1Q8CFK2 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Brf1Q8CFK2 Mlec-201ENSMUST00000112121 5955 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Brf1Q8CFK2 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC17.82■□□□□ 0.44
Brf1Q8CFK2 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Brf1Q8CFK2 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Brf1Q8CFK2 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC17.82■□□□□ 0.44
Brf1Q8CFK2 Tmem38a-201ENSMUST00000034244 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Brf1Q8CFK2 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Brf1Q8CFK2 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
Brf1Q8CFK2 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
Brf1Q8CFK2 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Brf1Q8CFK2 Mbtd1-202ENSMUST00000063718 3785 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Brf1Q8CFK2 Gm26702-201ENSMUST00000181730 4570 ntTSL 5 BASIC17.82■□□□□ 0.44
Brf1Q8CFK2 Mbp-204ENSMUST00000080658 2063 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Brf1Q8CFK2 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Brf1Q8CFK2 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC17.82■□□□□ 0.44
Brf1Q8CFK2 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Brf1Q8CFK2 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Brf1Q8CFK2 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Brf1Q8CFK2 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Brf1Q8CFK2 AI849053-201ENSMUST00000181021 2658 ntTSL 3 BASIC17.82■□□□□ 0.44
Brf1Q8CFK2 Fuz-213ENSMUST00000209039 1453 ntTSL 5 BASIC17.82■□□□□ 0.44
Brf1Q8CFK2 Rfx5-207ENSMUST00000137088 4333 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Brf1Q8CFK2 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
Brf1Q8CFK2 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Brf1Q8CFK2 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Brf1Q8CFK2 Gm8749-201ENSMUST00000117737 331 ntBASIC17.81■□□□□ 0.44
Brf1Q8CFK2 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC17.81■□□□□ 0.44
Brf1Q8CFK2 Mymx-202ENSMUST00000169137 616 ntAPPRIS P4 TSL 2 BASIC17.81■□□□□ 0.44
Brf1Q8CFK2 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC17.81■□□□□ 0.44
Brf1Q8CFK2 CT030684.1-201ENSMUST00000227292 914 ntBASIC17.81■□□□□ 0.44
Brf1Q8CFK2 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Brf1Q8CFK2 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Brf1Q8CFK2 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Brf1Q8CFK2 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Brf1Q8CFK2 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Brf1Q8CFK2 Col2a1-201ENSMUST00000023123 5104 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 29.1 ms