Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Mobp-207ENSMUST00000215512 498 ntTSL 2 BASIC19.11■□□□□ 0.65
Trim28Q62318 2900055J20Rik-201ENSMUST00000096572 723 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
Trim28Q62318 Acadm-201ENSMUST00000072697 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim28Q62318 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Trim28Q62318 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Trim28Q62318 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim28Q62318 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim28Q62318 G3bp2-209ENSMUST00000202258 1884 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim28Q62318 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim28Q62318 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
Trim28Q62318 Hadh-201ENSMUST00000029610 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim28Q62318 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim28Q62318 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim28Q62318 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim28Q62318 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim28Q62318 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim28Q62318 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim28Q62318 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Trim28Q62318 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC19.1■□□□□ 0.65
Trim28Q62318 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC19.1■□□□□ 0.65
Trim28Q62318 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Trim28Q62318 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
Trim28Q62318 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
Trim28Q62318 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
Trim28Q62318 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Trim28Q62318 Fbxo46-202ENSMUST00000165913 2498 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim28Q62318 Atcayos-202ENSMUST00000129950 1117 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Trim28Q62318 Six3os1-205ENSMUST00000175913 791 ntTSL 3 BASIC19.1■□□□□ 0.65
Trim28Q62318 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC19.1■□□□□ 0.65
Trim28Q62318 Bccip-201ENSMUST00000033282 1244 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim28Q62318 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim28Q62318 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim28Q62318 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim28Q62318 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim28Q62318 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim28Q62318 Mthfsd-202ENSMUST00000116415 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim28Q62318 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim28Q62318 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim28Q62318 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim28Q62318 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim28Q62318 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim28Q62318 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim28Q62318 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Trim28Q62318 Gas2l3-207ENSMUST00000220128 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim28Q62318 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim28Q62318 Gm24694-201ENSMUST00000180054 110 ntBASIC19.09■□□□□ 0.65
Trim28Q62318 Gm27663-201ENSMUST00000184839 110 ntBASIC19.09■□□□□ 0.65
Trim28Q62318 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC19.09■□□□□ 0.65
Trim28Q62318 AC238811.1-201ENSMUST00000225302 441 ntBASIC19.09■□□□□ 0.65
Trim28Q62318 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim28Q62318 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim28Q62318 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim28Q62318 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC19.09■□□□□ 0.65
Trim28Q62318 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Trim28Q62318 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Trim28Q62318 Ftcd-201ENSMUST00000001183 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Trim28Q62318 Gbgt1-203ENSMUST00000163121 1335 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
Trim28Q62318 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Trim28Q62318 Hist1h2br-202ENSMUST00000110476 381 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
Trim28Q62318 Gm4204-201ENSMUST00000110798 1231 ntBASIC19.08■□□□□ 0.64
Trim28Q62318 Gm7820-201ENSMUST00000121012 1052 ntBASIC19.08■□□□□ 0.64
Trim28Q62318 Gm3436-201ENSMUST00000179930 840 ntBASIC19.08■□□□□ 0.64
Trim28Q62318 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
Trim28Q62318 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Trim28Q62318 Gm45785-201ENSMUST00000209690 988 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
Trim28Q62318 Gm7730-201ENSMUST00000212486 454 ntBASIC19.08■□□□□ 0.64
Trim28Q62318 AI463170-203ENSMUST00000219353 430 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Trim28Q62318 Hist1h2bq-201ENSMUST00000078156 381 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
Trim28Q62318 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Trim28Q62318 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Trim28Q62318 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
Trim28Q62318 Irf8-205ENSMUST00000162001 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Trim28Q62318 Tssk4-202ENSMUST00000164809 1686 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Trim28Q62318 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trim28Q62318 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Trim28Q62318 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC19.07■□□□□ 0.64
Trim28Q62318 Elovl1-201ENSMUST00000006557 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trim28Q62318 Gtf2h4-207ENSMUST00000160734 1569 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Trim28Q62318 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Trim28Q62318 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Trim28Q62318 4930527A07Rik-201ENSMUST00000130677 559 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Trim28Q62318 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Trim28Q62318 Gldnos-201ENSMUST00000149237 841 ntTSL 2 BASIC19.07■□□□□ 0.64
Trim28Q62318 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trim28Q62318 Gm5866-201ENSMUST00000177881 973 ntBASIC19.07■□□□□ 0.64
Trim28Q62318 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trim28Q62318 Ramp3-201ENSMUST00000045374 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trim28Q62318 Hist1h3f-201ENSMUST00000075558 1261 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
Trim28Q62318 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trim28Q62318 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trim28Q62318 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Trim28Q62318 D130052B06Rik-201ENSMUST00000101371 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trim28Q62318 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trim28Q62318 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
Trim28Q62318 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trim28Q62318 Ldha-202ENSMUST00000048209 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trim28Q62318 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trim28Q62318 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trim28Q62318 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
Trim28Q62318 Gm14042-201ENSMUST00000120139 833 ntBASIC19.06■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 28.3 ms