Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Vps54Q5SPW0 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Vps54Q5SPW0 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Vps54Q5SPW0 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC17.74■□□□□ 0.43
Vps54Q5SPW0 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC17.74■□□□□ 0.43
Vps54Q5SPW0 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC17.74■□□□□ 0.43
Vps54Q5SPW0 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps54Q5SPW0 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps54Q5SPW0 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Vps54Q5SPW0 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps54Q5SPW0 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps54Q5SPW0 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Vps54Q5SPW0 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps54Q5SPW0 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps54Q5SPW0 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps54Q5SPW0 Zfp451-201ENSMUST00000019861 3958 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps54Q5SPW0 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps54Q5SPW0 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps54Q5SPW0 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps54Q5SPW0 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps54Q5SPW0 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC17.73■□□□□ 0.43
Vps54Q5SPW0 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
Vps54Q5SPW0 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps54Q5SPW0 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Vps54Q5SPW0 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Vps54Q5SPW0 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps54Q5SPW0 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Vps54Q5SPW0 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps54Q5SPW0 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC17.73■□□□□ 0.43
Vps54Q5SPW0 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps54Q5SPW0 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps54Q5SPW0 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps54Q5SPW0 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Vps54Q5SPW0 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps54Q5SPW0 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps54Q5SPW0 Irf8-205ENSMUST00000162001 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps54Q5SPW0 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps54Q5SPW0 Gm9768-201ENSMUST00000206007 2861 ntBASIC17.73■□□□□ 0.43
Vps54Q5SPW0 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps54Q5SPW0 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Vps54Q5SPW0 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps54Q5SPW0 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps54Q5SPW0 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC17.72■□□□□ 0.43
Vps54Q5SPW0 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Vps54Q5SPW0 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Vps54Q5SPW0 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Vps54Q5SPW0 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps54Q5SPW0 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps54Q5SPW0 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps54Q5SPW0 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps54Q5SPW0 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps54Q5SPW0 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Vps54Q5SPW0 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps54Q5SPW0 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps54Q5SPW0 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Vps54Q5SPW0 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC17.72■□□□□ 0.43
Vps54Q5SPW0 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Vps54Q5SPW0 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC17.72■□□□□ 0.43
Vps54Q5SPW0 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC17.72■□□□□ 0.43
Vps54Q5SPW0 Hsf4-207ENSMUST00000174837 1251 ntTSL 5 BASIC17.72■□□□□ 0.43
Vps54Q5SPW0 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps54Q5SPW0 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC17.72■□□□□ 0.43
Vps54Q5SPW0 AC131710.1-201ENSMUST00000228336 990 ntBASIC17.72■□□□□ 0.43
Vps54Q5SPW0 G430095P16Rik-201ENSMUST00000098571 721 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps54Q5SPW0 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps54Q5SPW0 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps54Q5SPW0 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps54Q5SPW0 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps54Q5SPW0 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Vps54Q5SPW0 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
Vps54Q5SPW0 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps54Q5SPW0 Gm42934-201ENSMUST00000196920 1345 ntBASIC17.72■□□□□ 0.43
Vps54Q5SPW0 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps54Q5SPW0 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps54Q5SPW0 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps54Q5SPW0 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Vps54Q5SPW0 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Vps54Q5SPW0 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Vps54Q5SPW0 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Vps54Q5SPW0 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.43
Vps54Q5SPW0 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC17.71■□□□□ 0.43
Vps54Q5SPW0 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Vps54Q5SPW0 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC17.71■□□□□ 0.43
Vps54Q5SPW0 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Vps54Q5SPW0 Gm5357-201ENSMUST00000212720 1924 ntBASIC17.71■□□□□ 0.43
Vps54Q5SPW0 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Vps54Q5SPW0 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Vps54Q5SPW0 Gm22065-201ENSMUST00000103753 110 ntBASIC17.71■□□□□ 0.43
Vps54Q5SPW0 Gm22066-201ENSMUST00000103761 110 ntBASIC17.71■□□□□ 0.43
Vps54Q5SPW0 Gm24932-201ENSMUST00000103763 110 ntBASIC17.71■□□□□ 0.43
Vps54Q5SPW0 Gm24115-201ENSMUST00000103799 110 ntBASIC17.71■□□□□ 0.43
Vps54Q5SPW0 Gm22190-201ENSMUST00000103827 110 ntBASIC17.71■□□□□ 0.43
Vps54Q5SPW0 Gm22191-201ENSMUST00000103831 110 ntBASIC17.71■□□□□ 0.43
Vps54Q5SPW0 Gm24721-201ENSMUST00000103849 110 ntBASIC17.71■□□□□ 0.43
Vps54Q5SPW0 Gm28018-201ENSMUST00000103869 110 ntBASIC17.71■□□□□ 0.43
Vps54Q5SPW0 Gm26399-201ENSMUST00000103937 110 ntBASIC17.71■□□□□ 0.43
Vps54Q5SPW0 AC155937.1-202ENSMUST00000156229 621 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
Vps54Q5SPW0 Gm25349-201ENSMUST00000177728 110 ntBASIC17.71■□□□□ 0.43
Vps54Q5SPW0 Gm23616-201ENSMUST00000177797 110 ntBASIC17.71■□□□□ 0.43
Vps54Q5SPW0 Gm25871-201ENSMUST00000177816 110 ntBASIC17.71■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 46.1 ms