Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Mon1a-202ENSMUST00000191906 2821 ntTSL 2 BASIC14.37□□□□□ -0.11
Col28a1Q2UY11 Pcyox1l-201ENSMUST00000025472 2017 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col28a1Q2UY11 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC14.37□□□□□ -0.11
Col28a1Q2UY11 Mast2-201ENSMUST00000003908 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col28a1Q2UY11 Gm18856-201ENSMUST00000178096 1374 ntBASIC14.37□□□□□ -0.11
Col28a1Q2UY11 Gm34419-201ENSMUST00000211383 1387 ntTSL 5 BASIC14.37□□□□□ -0.11
Col28a1Q2UY11 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC14.37□□□□□ -0.11
Col28a1Q2UY11 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col28a1Q2UY11 Chst10-205ENSMUST00000193441 4999 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Col28a1Q2UY11 Tub-202ENSMUST00000119474 2097 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Col28a1Q2UY11 Dimt1-201ENSMUST00000022203 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col28a1Q2UY11 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC14.37□□□□□ -0.11
Col28a1Q2UY11 Twsg1-201ENSMUST00000024906 4046 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col28a1Q2UY11 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col28a1Q2UY11 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col28a1Q2UY11 Dis3-201ENSMUST00000042471 5150 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Col28a1Q2UY11 Ddhd1-202ENSMUST00000087320 9820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col28a1Q2UY11 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC14.37□□□□□ -0.11
Col28a1Q2UY11 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC14.37□□□□□ -0.11
Col28a1Q2UY11 Sardhos-201ENSMUST00000170435 265 ntTSL 3 BASIC14.37□□□□□ -0.11
Col28a1Q2UY11 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Col28a1Q2UY11 Gm8000-201ENSMUST00000188378 592 ntBASIC14.37□□□□□ -0.11
Col28a1Q2UY11 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC14.37□□□□□ -0.11
Col28a1Q2UY11 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC14.37□□□□□ -0.11
Col28a1Q2UY11 Gm10060-201ENSMUST00000212002 111 ntBASIC14.37□□□□□ -0.11
Col28a1Q2UY11 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC14.37□□□□□ -0.11
Col28a1Q2UY11 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col28a1Q2UY11 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col28a1Q2UY11 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col28a1Q2UY11 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Col28a1Q2UY11 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col28a1Q2UY11 Olfr632-201ENSMUST00000098189 954 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
Col28a1Q2UY11 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col28a1Q2UY11 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col28a1Q2UY11 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Col28a1Q2UY11 Tvp23b-201ENSMUST00000014321 1784 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col28a1Q2UY11 Selenon-201ENSMUST00000060435 3445 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Col28a1Q2UY11 Kctd3-201ENSMUST00000085678 3706 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col28a1Q2UY11 Olfr718-ps1-203ENSMUST00000215102 4913 ntAPPRIS P5 TSL 5 BASIC14.37□□□□□ -0.11
Col28a1Q2UY11 Nell1-201ENSMUST00000081872 6617 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col28a1Q2UY11 Map3k14-201ENSMUST00000021324 4246 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col28a1Q2UY11 Slc2a6-201ENSMUST00000045702 2138 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col28a1Q2UY11 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col28a1Q2UY11 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Col28a1Q2UY11 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col28a1Q2UY11 Lin54-201ENSMUST00000046154 4451 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col28a1Q2UY11 Rnf150-201ENSMUST00000078525 9682 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col28a1Q2UY11 Fbxo34-203ENSMUST00000163324 3132 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
Col28a1Q2UY11 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col28a1Q2UY11 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col28a1Q2UY11 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC14.36□□□□□ -0.11
Col28a1Q2UY11 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC14.36□□□□□ -0.11
Col28a1Q2UY11 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col28a1Q2UY11 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC14.36□□□□□ -0.11
Col28a1Q2UY11 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Col28a1Q2UY11 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC14.36□□□□□ -0.11
Col28a1Q2UY11 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC14.36□□□□□ -0.11
Col28a1Q2UY11 Gm5364-201ENSMUST00000216789 889 ntBASIC14.36□□□□□ -0.11
Col28a1Q2UY11 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC14.36□□□□□ -0.11
Col28a1Q2UY11 AC127349.1-201ENSMUST00000224590 266 ntBASIC14.36□□□□□ -0.11
Col28a1Q2UY11 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col28a1Q2UY11 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col28a1Q2UY11 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC14.36□□□□□ -0.11
Col28a1Q2UY11 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col28a1Q2UY11 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col28a1Q2UY11 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col28a1Q2UY11 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col28a1Q2UY11 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col28a1Q2UY11 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col28a1Q2UY11 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Col28a1Q2UY11 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col28a1Q2UY11 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Col28a1Q2UY11 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col28a1Q2UY11 Fam208b-201ENSMUST00000096069 8338 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col28a1Q2UY11 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col28a1Q2UY11 Nacad-201ENSMUST00000045713 4892 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col28a1Q2UY11 Igf2-202ENSMUST00000097936 2503 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Col28a1Q2UY11 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col28a1Q2UY11 Pgm2-201ENSMUST00000058351 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col28a1Q2UY11 Efs-201ENSMUST00000022813 2705 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col28a1Q2UY11 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col28a1Q2UY11 Papd5-203ENSMUST00000119033 4624 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col28a1Q2UY11 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col28a1Q2UY11 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC14.35□□□□□ -0.11
Col28a1Q2UY11 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Col28a1Q2UY11 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col28a1Q2UY11 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Col28a1Q2UY11 Hnrnpa2b1-204ENSMUST00000203220 1638 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col28a1Q2UY11 Atp2a2-202ENSMUST00000177974 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col28a1Q2UY11 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC14.35□□□□□ -0.11
Col28a1Q2UY11 Gm12350-201ENSMUST00000121208 462 ntBASIC14.35□□□□□ -0.11
Col28a1Q2UY11 Gm43332-201ENSMUST00000202511 1044 ntBASIC14.35□□□□□ -0.11
Col28a1Q2UY11 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Col28a1Q2UY11 CT009510.1-201ENSMUST00000227972 270 ntBASIC14.35□□□□□ -0.11
Col28a1Q2UY11 Cda-201ENSMUST00000030535 846 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col28a1Q2UY11 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Col28a1Q2UY11 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC14.35□□□□□ -0.11
Col28a1Q2UY11 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Col28a1Q2UY11 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col28a1Q2UY11 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 49.1 ms