Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Mir7036b-201ENSMUST00000184791 63 ntBASIC17.25■□□□□ 0.35
Vps53Q8CCB4 Gm30437-201ENSMUST00000206086 1201 ntBASIC17.25■□□□□ 0.35
Vps53Q8CCB4 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Vps53Q8CCB4 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Vps53Q8CCB4 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Vps53Q8CCB4 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Vps53Q8CCB4 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Vps53Q8CCB4 Cacna2d1-205ENSMUST00000167946 7436 ntAPPRIS ALT1 TSL 5 BASIC17.25■□□□□ 0.35
Vps53Q8CCB4 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Vps53Q8CCB4 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Vps53Q8CCB4 Best4-ps-201ENSMUST00000129783 1380 ntBASIC17.25■□□□□ 0.35
Vps53Q8CCB4 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Vps53Q8CCB4 Dis3-201ENSMUST00000042471 5150 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Vps53Q8CCB4 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC17.25■□□□□ 0.35
Vps53Q8CCB4 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Vps53Q8CCB4 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Vps53Q8CCB4 Slc38a1-201ENSMUST00000088452 7266 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Vps53Q8CCB4 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Vps53Q8CCB4 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Vps53Q8CCB4 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Vps53Q8CCB4 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Vps53Q8CCB4 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC17.24■□□□□ 0.35
Vps53Q8CCB4 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Vps53Q8CCB4 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Vps53Q8CCB4 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Vps53Q8CCB4 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Vps53Q8CCB4 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Vps53Q8CCB4 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Vps53Q8CCB4 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC17.24■□□□□ 0.35
Vps53Q8CCB4 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Vps53Q8CCB4 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
Vps53Q8CCB4 AC151836.1-202ENSMUST00000226259 753 ntBASIC17.24■□□□□ 0.35
Vps53Q8CCB4 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC17.24■□□□□ 0.35
Vps53Q8CCB4 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Vps53Q8CCB4 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Vps53Q8CCB4 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Vps53Q8CCB4 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Vps53Q8CCB4 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Vps53Q8CCB4 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Vps53Q8CCB4 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Vps53Q8CCB4 Atp13a3-202ENSMUST00000100013 7310 ntAPPRIS P4 TSL 5 BASIC17.24■□□□□ 0.35
Vps53Q8CCB4 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Vps53Q8CCB4 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Vps53Q8CCB4 Tmco1-204ENSMUST00000195015 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Vps53Q8CCB4 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Vps53Q8CCB4 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Vps53Q8CCB4 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Vps53Q8CCB4 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC17.23■□□□□ 0.35
Vps53Q8CCB4 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC17.23■□□□□ 0.35
Vps53Q8CCB4 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Vps53Q8CCB4 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Vps53Q8CCB4 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Vps53Q8CCB4 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Vps53Q8CCB4 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Vps53Q8CCB4 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
Vps53Q8CCB4 Zbp1-201ENSMUST00000029018 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Vps53Q8CCB4 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Vps53Q8CCB4 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Vps53Q8CCB4 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Vps53Q8CCB4 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Vps53Q8CCB4 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC17.23■□□□□ 0.35
Vps53Q8CCB4 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Vps53Q8CCB4 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Vps53Q8CCB4 Gm17968-201ENSMUST00000194902 784 ntBASIC17.23■□□□□ 0.35
Vps53Q8CCB4 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Vps53Q8CCB4 AC139382.1-201ENSMUST00000221402 498 ntBASIC17.23■□□□□ 0.35
Vps53Q8CCB4 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Vps53Q8CCB4 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
Vps53Q8CCB4 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Vps53Q8CCB4 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
Vps53Q8CCB4 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Vps53Q8CCB4 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Vps53Q8CCB4 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Vps53Q8CCB4 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Vps53Q8CCB4 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Vps53Q8CCB4 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Vps53Q8CCB4 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
Vps53Q8CCB4 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC17.22■□□□□ 0.35
Vps53Q8CCB4 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Vps53Q8CCB4 Otud4-203ENSMUST00000173286 7213 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Vps53Q8CCB4 Col5a1-201ENSMUST00000028280 8406 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Vps53Q8CCB4 Zglp1-201ENSMUST00000115494 1010 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Vps53Q8CCB4 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC17.22■□□□□ 0.35
Vps53Q8CCB4 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Vps53Q8CCB4 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC17.22■□□□□ 0.35
Vps53Q8CCB4 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC17.22■□□□□ 0.35
Vps53Q8CCB4 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Vps53Q8CCB4 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Vps53Q8CCB4 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Vps53Q8CCB4 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Vps53Q8CCB4 Olfr718-ps1-203ENSMUST00000215102 4913 ntAPPRIS P5 TSL 5 BASIC17.22■□□□□ 0.35
Vps53Q8CCB4 Dapk1-201ENSMUST00000044083 5304 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Vps53Q8CCB4 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Vps53Q8CCB4 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Vps53Q8CCB4 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Vps53Q8CCB4 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Vps53Q8CCB4 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Vps53Q8CCB4 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Vps53Q8CCB4 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Vps53Q8CCB4 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 32.7 ms