Protein–RNA interactions for Protein: Q8C7M3

Trim9, E3 ubiquitin-protein ligase TRIM9, mousemouse

Predictions only

Length 817 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9Q8C7M3 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim9Q8C7M3 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Trim9Q8C7M3 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim9Q8C7M3 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim9Q8C7M3 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim9Q8C7M3 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
Trim9Q8C7M3 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim9Q8C7M3 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC16.34■□□□□ 0.21
Trim9Q8C7M3 Luc7l-203ENSMUST00000119928 1441 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
Trim9Q8C7M3 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim9Q8C7M3 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC16.34■□□□□ 0.21
Trim9Q8C7M3 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC16.34■□□□□ 0.21
Trim9Q8C7M3 Btd-201ENSMUST00000090147 2324 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim9Q8C7M3 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim9Q8C7M3 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
Trim9Q8C7M3 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Trim9Q8C7M3 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Trim9Q8C7M3 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
Trim9Q8C7M3 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Trim9Q8C7M3 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Trim9Q8C7M3 Tor1aip1-201ENSMUST00000027738 1952 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
Trim9Q8C7M3 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Trim9Q8C7M3 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.21
Trim9Q8C7M3 Mbp-204ENSMUST00000080658 2063 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Trim9Q8C7M3 Gm10676-201ENSMUST00000098778 3221 ntBASIC16.33■□□□□ 0.21
Trim9Q8C7M3 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim9Q8C7M3 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim9Q8C7M3 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim9Q8C7M3 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC16.33■□□□□ 0.2
Trim9Q8C7M3 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC16.33■□□□□ 0.2
Trim9Q8C7M3 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Trim9Q8C7M3 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim9Q8C7M3 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim9Q8C7M3 Tlr2-201ENSMUST00000029623 3014 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim9Q8C7M3 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim9Q8C7M3 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim9Q8C7M3 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Trim9Q8C7M3 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim9Q8C7M3 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim9Q8C7M3 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim9Q8C7M3 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Trim9Q8C7M3 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim9Q8C7M3 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim9Q8C7M3 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Trim9Q8C7M3 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC16.33■□□□□ 0.2
Trim9Q8C7M3 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim9Q8C7M3 Abhd15-201ENSMUST00000094004 2662 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim9Q8C7M3 Lipo3-202ENSMUST00000112508 2839 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim9Q8C7M3 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim9Q8C7M3 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim9Q8C7M3 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim9Q8C7M3 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC16.32■□□□□ 0.2
Trim9Q8C7M3 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC16.32■□□□□ 0.2
Trim9Q8C7M3 Slpi-201ENSMUST00000109367 876 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim9Q8C7M3 Slc6a8-203ENSMUST00000114465 3314 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim9Q8C7M3 Gm12892-201ENSMUST00000117367 1146 ntBASIC16.32■□□□□ 0.2
Trim9Q8C7M3 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Trim9Q8C7M3 Gm14026-201ENSMUST00000120625 1789 ntBASIC16.32■□□□□ 0.2
Trim9Q8C7M3 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC16.32■□□□□ 0.2
Trim9Q8C7M3 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim9Q8C7M3 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Trim9Q8C7M3 Gm9726-201ENSMUST00000180321 678 ntBASIC16.32■□□□□ 0.2
Trim9Q8C7M3 Gm18206-201ENSMUST00000207027 926 ntBASIC16.32■□□□□ 0.2
Trim9Q8C7M3 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Trim9Q8C7M3 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC16.32■□□□□ 0.2
Trim9Q8C7M3 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim9Q8C7M3 Cox7a2l-201ENSMUST00000025095 1078 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim9Q8C7M3 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Trim9Q8C7M3 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim9Q8C7M3 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim9Q8C7M3 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Trim9Q8C7M3 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim9Q8C7M3 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim9Q8C7M3 Galnt14-201ENSMUST00000024858 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim9Q8C7M3 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Trim9Q8C7M3 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim9Q8C7M3 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim9Q8C7M3 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim9Q8C7M3 Echdc1-202ENSMUST00000160399 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim9Q8C7M3 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim9Q8C7M3 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Trim9Q8C7M3 Lat2-201ENSMUST00000036362 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim9Q8C7M3 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim9Q8C7M3 AC164565.1-201ENSMUST00000217520 1484 ntBASIC16.31■□□□□ 0.2
Trim9Q8C7M3 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim9Q8C7M3 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Trim9Q8C7M3 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim9Q8C7M3 Mocs1-201ENSMUST00000024797 2646 ntTSL 5 BASIC16.31■□□□□ 0.2
Trim9Q8C7M3 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC16.31■□□□□ 0.2
Trim9Q8C7M3 Gm4691-201ENSMUST00000182339 1000 ntBASIC16.31■□□□□ 0.2
Trim9Q8C7M3 Gm44492-201ENSMUST00000197012 141 ntBASIC16.31■□□□□ 0.2
Trim9Q8C7M3 Gm2451-201ENSMUST00000199447 999 ntBASIC16.31■□□□□ 0.2
Trim9Q8C7M3 Gm10290-201ENSMUST00000200451 999 ntBASIC16.31■□□□□ 0.2
Trim9Q8C7M3 Gm44771-201ENSMUST00000206975 626 ntBASIC16.31■□□□□ 0.2
Trim9Q8C7M3 AC174742.1-201ENSMUST00000218272 304 ntBASIC16.31■□□□□ 0.2
Trim9Q8C7M3 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim9Q8C7M3 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim9Q8C7M3 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim9Q8C7M3 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim9Q8C7M3 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 44.9 ms