Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trim56Q80VI1 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trim56Q80VI1 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trim56Q80VI1 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
Trim56Q80VI1 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trim56Q80VI1 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Trim56Q80VI1 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Trim56Q80VI1 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
Trim56Q80VI1 Aanat-205ENSMUST00000153476 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trim56Q80VI1 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC17.46■□□□□ 0.39
Trim56Q80VI1 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Trim56Q80VI1 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC17.46■□□□□ 0.39
Trim56Q80VI1 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Trim56Q80VI1 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Trim56Q80VI1 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trim56Q80VI1 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trim56Q80VI1 G430095P16Rik-201ENSMUST00000098571 721 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trim56Q80VI1 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trim56Q80VI1 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Trim56Q80VI1 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trim56Q80VI1 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC17.46■□□□□ 0.39
Trim56Q80VI1 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.38
Trim56Q80VI1 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim56Q80VI1 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim56Q80VI1 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Trim56Q80VI1 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim56Q80VI1 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim56Q80VI1 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim56Q80VI1 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim56Q80VI1 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC17.45■□□□□ 0.38
Trim56Q80VI1 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Trim56Q80VI1 Gm5312-201ENSMUST00000203728 547 ntBASIC17.45■□□□□ 0.38
Trim56Q80VI1 Olfr286-202ENSMUST00000205305 969 ntBASIC17.45■□□□□ 0.38
Trim56Q80VI1 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim56Q80VI1 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim56Q80VI1 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim56Q80VI1 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Trim56Q80VI1 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Trim56Q80VI1 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim56Q80VI1 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC17.45■□□□□ 0.38
Trim56Q80VI1 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim56Q80VI1 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim56Q80VI1 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim56Q80VI1 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim56Q80VI1 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim56Q80VI1 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim56Q80VI1 Ttll5-201ENSMUST00000040179 5081 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim56Q80VI1 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Trim56Q80VI1 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Trim56Q80VI1 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Trim56Q80VI1 Wdr73-201ENSMUST00000026816 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim56Q80VI1 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim56Q80VI1 Llgl1-201ENSMUST00000052346 4303 ntAPPRIS P4 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim56Q80VI1 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
Trim56Q80VI1 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
Trim56Q80VI1 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Trim56Q80VI1 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC17.44■□□□□ 0.38
Trim56Q80VI1 Gm9726-201ENSMUST00000180321 678 ntBASIC17.44■□□□□ 0.38
Trim56Q80VI1 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC17.44■□□□□ 0.38
Trim56Q80VI1 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Trim56Q80VI1 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim56Q80VI1 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
Trim56Q80VI1 Zkscan3-208ENSMUST00000224820 5398 ntBASIC17.44■□□□□ 0.38
Trim56Q80VI1 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Trim56Q80VI1 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
Trim56Q80VI1 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim56Q80VI1 Gm42934-201ENSMUST00000196920 1345 ntBASIC17.44■□□□□ 0.38
Trim56Q80VI1 4930481A15Rik-201ENSMUST00000128542 2106 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Trim56Q80VI1 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim56Q80VI1 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim56Q80VI1 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim56Q80VI1 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim56Q80VI1 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
Trim56Q80VI1 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim56Q80VI1 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim56Q80VI1 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim56Q80VI1 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC17.43■□□□□ 0.38
Trim56Q80VI1 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Trim56Q80VI1 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim56Q80VI1 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
Trim56Q80VI1 Cmc2-202ENSMUST00000128304 394 ntTSL 5 BASIC17.43■□□□□ 0.38
Trim56Q80VI1 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
Trim56Q80VI1 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC17.43■□□□□ 0.38
Trim56Q80VI1 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim56Q80VI1 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim56Q80VI1 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
Trim56Q80VI1 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Trim56Q80VI1 Akt2-ps-201ENSMUST00000120718 1449 ntBASIC17.43■□□□□ 0.38
Trim56Q80VI1 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim56Q80VI1 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim56Q80VI1 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim56Q80VI1 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
Trim56Q80VI1 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim56Q80VI1 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim56Q80VI1 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim56Q80VI1 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Trim56Q80VI1 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim56Q80VI1 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim56Q80VI1 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim56Q80VI1 Gm17108-201ENSMUST00000168625 2877 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 30.6 ms