Protein–RNA interactions for Protein: Q6P1Y1

Rtl3, Retrotransposon Gag-like protein 3, mousemouse

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rtl3Q6P1Y1 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Rtl3Q6P1Y1 Nrn1-204ENSMUST00000224323 1779 ntBASIC15.31■□□□□ 0.04
Rtl3Q6P1Y1 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Rtl3Q6P1Y1 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Rtl3Q6P1Y1 Sgpl1-202ENSMUST00000122259 4102 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Rtl3Q6P1Y1 Dmtn-201ENSMUST00000022694 5418 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
Rtl3Q6P1Y1 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Rtl3Q6P1Y1 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Rtl3Q6P1Y1 Adcy3-204ENSMUST00000127756 4672 ntAPPRIS P3 TSL 5 BASIC15.3■□□□□ 0.04
Rtl3Q6P1Y1 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Rtl3Q6P1Y1 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Rtl3Q6P1Y1 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Rtl3Q6P1Y1 Gm20553-201ENSMUST00000204205 844 ntBASIC15.3■□□□□ 0.04
Rtl3Q6P1Y1 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC15.3■□□□□ 0.04
Rtl3Q6P1Y1 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
Rtl3Q6P1Y1 Gm45612-201ENSMUST00000211320 160 ntBASIC15.3■□□□□ 0.04
Rtl3Q6P1Y1 AC159114.1-201ENSMUST00000220349 266 ntBASIC15.3■□□□□ 0.04
Rtl3Q6P1Y1 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC15.3■□□□□ 0.04
Rtl3Q6P1Y1 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Rtl3Q6P1Y1 Arl3-201ENSMUST00000026009 822 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Rtl3Q6P1Y1 Erp27-201ENSMUST00000032343 1029 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Rtl3Q6P1Y1 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Rtl3Q6P1Y1 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Rtl3Q6P1Y1 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Rtl3Q6P1Y1 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Rtl3Q6P1Y1 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Rtl3Q6P1Y1 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Rtl3Q6P1Y1 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Rtl3Q6P1Y1 Kcnq2-217ENSMUST00000149964 8209 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Rtl3Q6P1Y1 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC15.3■□□□□ 0.04
Rtl3Q6P1Y1 Itgav-201ENSMUST00000028499 7054 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Rtl3Q6P1Y1 Col4a2-201ENSMUST00000033899 6450 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Rtl3Q6P1Y1 Pacs2-201ENSMUST00000084891 5480 ntAPPRIS P2 TSL 5 BASIC15.3■□□□□ 0.04
Rtl3Q6P1Y1 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Rtl3Q6P1Y1 Rad54l2-201ENSMUST00000046502 9305 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Rtl3Q6P1Y1 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Rtl3Q6P1Y1 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
Rtl3Q6P1Y1 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Rtl3Q6P1Y1 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Rtl3Q6P1Y1 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC15.29■□□□□ 0.04
Rtl3Q6P1Y1 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Rtl3Q6P1Y1 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Rtl3Q6P1Y1 Per3-201ENSMUST00000103204 5999 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Rtl3Q6P1Y1 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Rtl3Q6P1Y1 Rcn3-208ENSMUST00000211352 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Rtl3Q6P1Y1 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
Rtl3Q6P1Y1 Myh14-201ENSMUST00000048102 6457 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Rtl3Q6P1Y1 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Rtl3Q6P1Y1 Gm11745-201ENSMUST00000121669 448 ntBASIC15.29■□□□□ 0.04
Rtl3Q6P1Y1 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC15.29■□□□□ 0.04
Rtl3Q6P1Y1 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Rtl3Q6P1Y1 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC15.29■□□□□ 0.04
Rtl3Q6P1Y1 Mir6956-201ENSMUST00000183598 62 ntBASIC15.29■□□□□ 0.04
Rtl3Q6P1Y1 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC15.29■□□□□ 0.04
Rtl3Q6P1Y1 Dad1-201ENSMUST00000022781 878 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Rtl3Q6P1Y1 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Rtl3Q6P1Y1 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Rtl3Q6P1Y1 Pou2f3-202ENSMUST00000176636 2522 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Rtl3Q6P1Y1 Gm14780-201ENSMUST00000118387 2737 ntBASIC15.29■□□□□ 0.04
Rtl3Q6P1Y1 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
Rtl3Q6P1Y1 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Rtl3Q6P1Y1 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Rtl3Q6P1Y1 Col4a1-201ENSMUST00000033898 6615 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Rtl3Q6P1Y1 Gm37812-201ENSMUST00000195216 2475 ntBASIC15.28■□□□□ 0.04
Rtl3Q6P1Y1 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Rtl3Q6P1Y1 Kcnq2-220ENSMUST00000197015 8031 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Rtl3Q6P1Y1 Rsbn1l-201ENSMUST00000036489 5550 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
Rtl3Q6P1Y1 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Rtl3Q6P1Y1 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC15.28■□□□□ 0.04
Rtl3Q6P1Y1 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Rtl3Q6P1Y1 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Rtl3Q6P1Y1 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Rtl3Q6P1Y1 Foxp2-207ENSMUST00000115477 6760 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Rtl3Q6P1Y1 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Rtl3Q6P1Y1 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Rtl3Q6P1Y1 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC15.28■□□□□ 0.04
Rtl3Q6P1Y1 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Rtl3Q6P1Y1 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Rtl3Q6P1Y1 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC15.28■□□□□ 0.04
Rtl3Q6P1Y1 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Rtl3Q6P1Y1 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
Rtl3Q6P1Y1 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC15.28■□□□□ 0.04
Rtl3Q6P1Y1 AC139382.1-201ENSMUST00000221402 498 ntBASIC15.28■□□□□ 0.04
Rtl3Q6P1Y1 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Rtl3Q6P1Y1 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC15.28■□□□□ 0.04
Rtl3Q6P1Y1 Gpr146-202ENSMUST00000053120 1040 ntBASIC15.28■□□□□ 0.04
Rtl3Q6P1Y1 Gatad2a-203ENSMUST00000177851 5007 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Rtl3Q6P1Y1 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Rtl3Q6P1Y1 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Rtl3Q6P1Y1 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Rtl3Q6P1Y1 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Rtl3Q6P1Y1 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Rtl3Q6P1Y1 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Rtl3Q6P1Y1 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Rtl3Q6P1Y1 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.04
Rtl3Q6P1Y1 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Rtl3Q6P1Y1 Zfp451-201ENSMUST00000019861 3958 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Rtl3Q6P1Y1 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Rtl3Q6P1Y1 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Rtl3Q6P1Y1 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 39.1 ms