Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Six4Q61321 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Six4Q61321 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Six4Q61321 Map7d1-203ENSMUST00000122129 3249 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
Six4Q61321 Nrn1-204ENSMUST00000224323 1779 ntBASIC14.95□□□□□ -0.02
Six4Q61321 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Six4Q61321 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Six4Q61321 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Six4Q61321 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Six4Q61321 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
Six4Q61321 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Six4Q61321 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Six4Q61321 Gm45133-201ENSMUST00000207548 2773 ntBASIC14.94□□□□□ -0.02
Six4Q61321 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Six4Q61321 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
Six4Q61321 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC14.94□□□□□ -0.02
Six4Q61321 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Six4Q61321 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC14.94□□□□□ -0.02
Six4Q61321 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC14.94□□□□□ -0.02
Six4Q61321 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Six4Q61321 Klk2-ps-201ENSMUST00000205342 571 ntBASIC14.94□□□□□ -0.02
Six4Q61321 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Six4Q61321 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Six4Q61321 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Six4Q61321 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC14.94□□□□□ -0.02
Six4Q61321 Sfn-201ENSMUST00000057311 1613 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
Six4Q61321 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Six4Q61321 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC14.94□□□□□ -0.02
Six4Q61321 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Six4Q61321 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Six4Q61321 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Six4Q61321 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Six4Q61321 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
Six4Q61321 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
Six4Q61321 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC14.94□□□□□ -0.02
Six4Q61321 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC14.93□□□□□ -0.02
Six4Q61321 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Six4Q61321 Ttc22-201ENSMUST00000047922 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Six4Q61321 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC14.93□□□□□ -0.02
Six4Q61321 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Six4Q61321 Padi4-201ENSMUST00000026381 2316 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Six4Q61321 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Six4Q61321 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
Six4Q61321 Fdx1-202ENSMUST00000214013 2759 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Six4Q61321 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Six4Q61321 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
Six4Q61321 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Six4Q61321 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC14.93□□□□□ -0.02
Six4Q61321 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
Six4Q61321 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC14.93□□□□□ -0.02
Six4Q61321 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
Six4Q61321 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
Six4Q61321 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Six4Q61321 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Six4Q61321 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Six4Q61321 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
Six4Q61321 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC14.93□□□□□ -0.02
Six4Q61321 Gm24513-201ENSMUST00000174964 138 ntBASIC14.93□□□□□ -0.02
Six4Q61321 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
Six4Q61321 Gm37736-201ENSMUST00000193564 2802 ntBASIC14.93□□□□□ -0.02
Six4Q61321 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Six4Q61321 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
Six4Q61321 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
Six4Q61321 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Six4Q61321 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Six4Q61321 AC126250.1-201ENSMUST00000228343 1768 ntBASIC14.93□□□□□ -0.02
Six4Q61321 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Six4Q61321 Nrxn1-216ENSMUST00000174331 6282 ntAPPRIS ALT1 TSL 5 BASIC14.93□□□□□ -0.02
Six4Q61321 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
Six4Q61321 Scara3-201ENSMUST00000042046 3597 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Six4Q61321 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC14.93□□□□□ -0.02
Six4Q61321 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
Six4Q61321 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC14.92□□□□□ -0.02
Six4Q61321 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Six4Q61321 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Six4Q61321 Wdr73-201ENSMUST00000026816 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Six4Q61321 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
Six4Q61321 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC14.92□□□□□ -0.02
Six4Q61321 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
Six4Q61321 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC14.92□□□□□ -0.02
Six4Q61321 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC14.92□□□□□ -0.02
Six4Q61321 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Six4Q61321 Gm27397-201ENSMUST00000184997 107 ntBASIC14.92□□□□□ -0.02
Six4Q61321 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC14.92□□□□□ -0.02
Six4Q61321 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC14.92□□□□□ -0.02
Six4Q61321 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC14.92□□□□□ -0.02
Six4Q61321 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Six4Q61321 Crxos-201ENSMUST00000098801 934 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Six4Q61321 Gm13332-201ENSMUST00000120451 1398 ntBASIC14.92□□□□□ -0.02
Six4Q61321 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Six4Q61321 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Six4Q61321 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Six4Q61321 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Six4Q61321 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Six4Q61321 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Six4Q61321 Kdm8-201ENSMUST00000033010 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Six4Q61321 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
Six4Q61321 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Six4Q61321 9130024F11Rik-202ENSMUST00000185204 2628 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Six4Q61321 Pltp-201ENSMUST00000059954 1809 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 30.3 ms