Protein–RNA interactions for Protein: Q5SNZ0

Ccdc88a, Girdin, mousemouse

Predictions only

Length 1,873 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88aQ5SNZ0 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ccdc88aQ5SNZ0 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ccdc88aQ5SNZ0 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ccdc88aQ5SNZ0 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ccdc88aQ5SNZ0 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ccdc88aQ5SNZ0 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ccdc88aQ5SNZ0 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ccdc88aQ5SNZ0 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ccdc88aQ5SNZ0 Ntan1-202ENSMUST00000115805 984 ntTSL 3 BASIC16.9■□□□□ 0.3
Ccdc88aQ5SNZ0 Gm36979-201ENSMUST00000193616 539 ntTSL 5 BASIC16.9■□□□□ 0.3
Ccdc88aQ5SNZ0 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Ccdc88aQ5SNZ0 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
Ccdc88aQ5SNZ0 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ccdc88aQ5SNZ0 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Ccdc88aQ5SNZ0 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Ccdc88aQ5SNZ0 Gm16425-201ENSMUST00000118143 3130 ntBASIC16.9■□□□□ 0.3
Ccdc88aQ5SNZ0 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
Ccdc88aQ5SNZ0 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ccdc88aQ5SNZ0 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ccdc88aQ5SNZ0 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Ccdc88aQ5SNZ0 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ccdc88aQ5SNZ0 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ccdc88aQ5SNZ0 Syt7-204ENSMUST00000223586 1344 ntBASIC16.9■□□□□ 0.3
Ccdc88aQ5SNZ0 Zdhhc19-201ENSMUST00000064192 1323 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ccdc88aQ5SNZ0 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ccdc88aQ5SNZ0 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Ccdc88aQ5SNZ0 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Ccdc88aQ5SNZ0 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ccdc88aQ5SNZ0 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ccdc88aQ5SNZ0 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ccdc88aQ5SNZ0 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Ccdc88aQ5SNZ0 Ccnh-202ENSMUST00000163600 1055 ntTSL 5 BASIC16.9■□□□□ 0.3
Ccdc88aQ5SNZ0 Gm29542-201ENSMUST00000186876 704 ntTSL 3 BASIC16.9■□□□□ 0.3
Ccdc88aQ5SNZ0 Gm18018-201ENSMUST00000198273 408 ntBASIC16.9■□□□□ 0.3
Ccdc88aQ5SNZ0 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ccdc88aQ5SNZ0 Nudt17-201ENSMUST00000029742 1039 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Ccdc88aQ5SNZ0 Calml4-201ENSMUST00000034777 864 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ccdc88aQ5SNZ0 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC16.9■□□□□ 0.3
Ccdc88aQ5SNZ0 Ptcd2-201ENSMUST00000022153 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ccdc88aQ5SNZ0 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ccdc88aQ5SNZ0 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ccdc88aQ5SNZ0 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ccdc88aQ5SNZ0 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ccdc88aQ5SNZ0 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Ccdc88aQ5SNZ0 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC16.89■□□□□ 0.29
Ccdc88aQ5SNZ0 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
Ccdc88aQ5SNZ0 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ccdc88aQ5SNZ0 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
Ccdc88aQ5SNZ0 Pisd-ps1-201ENSMUST00000119128 1115 ntBASIC16.89■□□□□ 0.29
Ccdc88aQ5SNZ0 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
Ccdc88aQ5SNZ0 Gm6180-201ENSMUST00000065243 498 ntBASIC16.89■□□□□ 0.29
Ccdc88aQ5SNZ0 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ccdc88aQ5SNZ0 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ccdc88aQ5SNZ0 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC16.89■□□□□ 0.29
Ccdc88aQ5SNZ0 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ccdc88aQ5SNZ0 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ccdc88aQ5SNZ0 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ccdc88aQ5SNZ0 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC16.89■□□□□ 0.29
Ccdc88aQ5SNZ0 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
Ccdc88aQ5SNZ0 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC16.89■□□□□ 0.29
Ccdc88aQ5SNZ0 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ccdc88aQ5SNZ0 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ccdc88aQ5SNZ0 Camk2g-217ENSMUST00000226630 1937 ntBASIC16.89■□□□□ 0.29
Ccdc88aQ5SNZ0 Gm15321-201ENSMUST00000121290 288 ntBASIC16.88■□□□□ 0.29
Ccdc88aQ5SNZ0 E130201H02Rik-201ENSMUST00000123576 851 ntBASIC16.88■□□□□ 0.29
Ccdc88aQ5SNZ0 4833428L15Rik-201ENSMUST00000181230 1259 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc88aQ5SNZ0 Gm8116-201ENSMUST00000182917 1201 ntBASIC16.88■□□□□ 0.29
Ccdc88aQ5SNZ0 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC16.88■□□□□ 0.29
Ccdc88aQ5SNZ0 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc88aQ5SNZ0 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc88aQ5SNZ0 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc88aQ5SNZ0 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc88aQ5SNZ0 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc88aQ5SNZ0 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc88aQ5SNZ0 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc88aQ5SNZ0 AC154231.1-201ENSMUST00000220564 2175 ntBASIC16.88■□□□□ 0.29
Ccdc88aQ5SNZ0 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc88aQ5SNZ0 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc88aQ5SNZ0 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc88aQ5SNZ0 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
Ccdc88aQ5SNZ0 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
Ccdc88aQ5SNZ0 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc88aQ5SNZ0 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc88aQ5SNZ0 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
Ccdc88aQ5SNZ0 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc88aQ5SNZ0 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc88aQ5SNZ0 Mturn-202ENSMUST00000187701 503 ntTSL 5 BASIC16.88■□□□□ 0.29
Ccdc88aQ5SNZ0 Gm6266-201ENSMUST00000203844 806 ntBASIC16.88■□□□□ 0.29
Ccdc88aQ5SNZ0 AC166349.1-201ENSMUST00000220866 695 ntBASIC16.88■□□□□ 0.29
Ccdc88aQ5SNZ0 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc88aQ5SNZ0 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc88aQ5SNZ0 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc88aQ5SNZ0 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc88aQ5SNZ0 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ccdc88aQ5SNZ0 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ccdc88aQ5SNZ0 Plekha1-202ENSMUST00000075181 2301 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ccdc88aQ5SNZ0 Pdgfrl-201ENSMUST00000034004 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ccdc88aQ5SNZ0 Pde7b-206ENSMUST00000170265 1380 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
Ccdc88aQ5SNZ0 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC16.87■□□□□ 0.29
Ccdc88aQ5SNZ0 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 45.8 ms