Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Upf3bQ3ULL6 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Upf3bQ3ULL6 Tspyl-ps-201ENSMUST00000220692 1117 ntBASIC15.86■□□□□ 0.13
Upf3bQ3ULL6 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Upf3bQ3ULL6 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Upf3bQ3ULL6 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Upf3bQ3ULL6 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Upf3bQ3ULL6 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
Upf3bQ3ULL6 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Upf3bQ3ULL6 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Upf3bQ3ULL6 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC15.86■□□□□ 0.13
Upf3bQ3ULL6 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Upf3bQ3ULL6 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
Upf3bQ3ULL6 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Upf3bQ3ULL6 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC15.86■□□□□ 0.13
Upf3bQ3ULL6 Gm37305-201ENSMUST00000195714 4279 ntBASIC15.86■□□□□ 0.13
Upf3bQ3ULL6 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Upf3bQ3ULL6 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC15.86■□□□□ 0.13
Upf3bQ3ULL6 Sec24a-204ENSMUST00000109097 6581 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
Upf3bQ3ULL6 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Upf3bQ3ULL6 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC15.86■□□□□ 0.13
Upf3bQ3ULL6 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC15.86■□□□□ 0.13
Upf3bQ3ULL6 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
Upf3bQ3ULL6 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Upf3bQ3ULL6 Tacc1-202ENSMUST00000084512 6471 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Upf3bQ3ULL6 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Upf3bQ3ULL6 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Upf3bQ3ULL6 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Upf3bQ3ULL6 Pou2f3-202ENSMUST00000176636 2522 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Upf3bQ3ULL6 Efs-202ENSMUST00000227037 2540 ntBASIC15.85■□□□□ 0.13
Upf3bQ3ULL6 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC15.85■□□□□ 0.13
Upf3bQ3ULL6 Gm15427-201ENSMUST00000117288 531 ntBASIC15.85■□□□□ 0.13
Upf3bQ3ULL6 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC15.85■□□□□ 0.13
Upf3bQ3ULL6 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Upf3bQ3ULL6 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC15.85■□□□□ 0.13
Upf3bQ3ULL6 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Upf3bQ3ULL6 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Upf3bQ3ULL6 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Upf3bQ3ULL6 Kcnh1-202ENSMUST00000110844 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Upf3bQ3ULL6 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Upf3bQ3ULL6 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Upf3bQ3ULL6 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
Upf3bQ3ULL6 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Upf3bQ3ULL6 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Upf3bQ3ULL6 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Upf3bQ3ULL6 Dsel-201ENSMUST00000035462 5759 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Upf3bQ3ULL6 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Upf3bQ3ULL6 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Upf3bQ3ULL6 Kdm7a-201ENSMUST00000002305 9566 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Upf3bQ3ULL6 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Upf3bQ3ULL6 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
Upf3bQ3ULL6 Arl5c-201ENSMUST00000042971 1571 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Upf3bQ3ULL6 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Upf3bQ3ULL6 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Upf3bQ3ULL6 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Upf3bQ3ULL6 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Upf3bQ3ULL6 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Upf3bQ3ULL6 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Upf3bQ3ULL6 Commd5-202ENSMUST00000109793 920 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
Upf3bQ3ULL6 Gm11594-201ENSMUST00000122313 162 ntBASIC15.84■□□□□ 0.13
Upf3bQ3ULL6 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
Upf3bQ3ULL6 Gm8597-201ENSMUST00000191525 1109 ntBASIC15.84■□□□□ 0.13
Upf3bQ3ULL6 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC15.84■□□□□ 0.13
Upf3bQ3ULL6 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC15.84■□□□□ 0.13
Upf3bQ3ULL6 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Upf3bQ3ULL6 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Upf3bQ3ULL6 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Upf3bQ3ULL6 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Upf3bQ3ULL6 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Upf3bQ3ULL6 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Upf3bQ3ULL6 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
Upf3bQ3ULL6 Gm45605-201ENSMUST00000210265 4269 ntBASIC15.84■□□□□ 0.13
Upf3bQ3ULL6 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Upf3bQ3ULL6 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Upf3bQ3ULL6 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Upf3bQ3ULL6 Htr7-205ENSMUST00000166074 3079 ntTSL 5 BASIC15.83■□□□□ 0.13
Upf3bQ3ULL6 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.13
Upf3bQ3ULL6 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
Upf3bQ3ULL6 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Upf3bQ3ULL6 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Upf3bQ3ULL6 Pcdha4-202ENSMUST00000192512 5363 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Upf3bQ3ULL6 Plk1-201ENSMUST00000033154 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Upf3bQ3ULL6 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.13
Upf3bQ3ULL6 Klc1-203ENSMUST00000120544 2261 ntAPPRIS ALT1 TSL 5 BASIC15.83■□□□□ 0.13
Upf3bQ3ULL6 Gm37728-201ENSMUST00000195025 2292 ntBASIC15.83■□□□□ 0.13
Upf3bQ3ULL6 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Upf3bQ3ULL6 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC15.83■□□□□ 0.12
Upf3bQ3ULL6 Gpd1l-204ENSMUST00000146623 4391 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Upf3bQ3ULL6 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
Upf3bQ3ULL6 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
Upf3bQ3ULL6 Gm4913-201ENSMUST00000117075 1290 ntBASIC15.83■□□□□ 0.12
Upf3bQ3ULL6 Gm6226-201ENSMUST00000117765 1146 ntBASIC15.83■□□□□ 0.12
Upf3bQ3ULL6 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Upf3bQ3ULL6 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC15.83■□□□□ 0.12
Upf3bQ3ULL6 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC15.83■□□□□ 0.12
Upf3bQ3ULL6 Gm5357-201ENSMUST00000212720 1924 ntBASIC15.83■□□□□ 0.12
Upf3bQ3ULL6 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Upf3bQ3ULL6 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Upf3bQ3ULL6 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Upf3bQ3ULL6 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 22.7 ms