Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Tvp23b-201ENSMUST00000014321 1784 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Upf3aQ3ULJ3 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC15.54■□□□□ 0.08
Upf3aQ3ULJ3 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Upf3aQ3ULJ3 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Upf3aQ3ULJ3 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Upf3aQ3ULJ3 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Upf3aQ3ULJ3 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
Upf3aQ3ULJ3 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Upf3aQ3ULJ3 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Upf3aQ3ULJ3 Gm8749-201ENSMUST00000117737 331 ntBASIC15.54■□□□□ 0.08
Upf3aQ3ULJ3 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC15.54■□□□□ 0.08
Upf3aQ3ULJ3 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC15.54■□□□□ 0.08
Upf3aQ3ULJ3 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC15.54■□□□□ 0.08
Upf3aQ3ULJ3 Gm6222-201ENSMUST00000120787 396 ntBASIC15.54■□□□□ 0.08
Upf3aQ3ULJ3 Unkl-205ENSMUST00000161679 1053 ntTSL 5 BASIC15.54■□□□□ 0.08
Upf3aQ3ULJ3 Baiap2l2-205ENSMUST00000170955 1058 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Upf3aQ3ULJ3 Gm5819-201ENSMUST00000171469 465 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
Upf3aQ3ULJ3 Gm26515-201ENSMUST00000181141 996 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Upf3aQ3ULJ3 Gm27631-201ENSMUST00000184163 466 ntBASIC15.54■□□□□ 0.08
Upf3aQ3ULJ3 Gm35549-203ENSMUST00000204619 644 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
Upf3aQ3ULJ3 B9d2-202ENSMUST00000205325 593 ntTSL 2 BASIC15.54■□□□□ 0.08
Upf3aQ3ULJ3 Gm46209-201ENSMUST00000217912 553 ntBASIC15.54■□□□□ 0.08
Upf3aQ3ULJ3 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Upf3aQ3ULJ3 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Upf3aQ3ULJ3 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Upf3aQ3ULJ3 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Upf3aQ3ULJ3 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC15.54■□□□□ 0.08
Upf3aQ3ULJ3 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
Upf3aQ3ULJ3 Gcnt4-201ENSMUST00000171324 5087 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Upf3aQ3ULJ3 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Upf3aQ3ULJ3 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
Upf3aQ3ULJ3 Camsap1-202ENSMUST00000114167 7981 ntAPPRIS P2 TSL 5 BASIC15.54■□□□□ 0.08
Upf3aQ3ULJ3 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
Upf3aQ3ULJ3 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
Upf3aQ3ULJ3 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Upf3aQ3ULJ3 Asic1-205ENSMUST00000228185 1818 ntBASIC15.54■□□□□ 0.08
Upf3aQ3ULJ3 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Upf3aQ3ULJ3 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Upf3aQ3ULJ3 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC15.53■□□□□ 0.08
Upf3aQ3ULJ3 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Upf3aQ3ULJ3 Atp4b-201ENSMUST00000033826 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Upf3aQ3ULJ3 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
Upf3aQ3ULJ3 Rab22a-201ENSMUST00000029024 7155 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Upf3aQ3ULJ3 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Upf3aQ3ULJ3 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Upf3aQ3ULJ3 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
Upf3aQ3ULJ3 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Upf3aQ3ULJ3 Trav13-3-201ENSMUST00000117226 336 ntBASIC15.53■□□□□ 0.08
Upf3aQ3ULJ3 Gm4875-201ENSMUST00000118257 786 ntBASIC15.53■□□□□ 0.08
Upf3aQ3ULJ3 Tmem128-202ENSMUST00000119047 726 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Upf3aQ3ULJ3 1700042O10Rik-201ENSMUST00000151032 1075 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Upf3aQ3ULJ3 Spata3-209ENSMUST00000152501 743 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Upf3aQ3ULJ3 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Upf3aQ3ULJ3 Gm9794-201ENSMUST00000202370 423 ntBASIC15.53■□□□□ 0.08
Upf3aQ3ULJ3 Gm7653-201ENSMUST00000214567 508 ntBASIC15.53■□□□□ 0.08
Upf3aQ3ULJ3 Gm6218-201ENSMUST00000219812 628 ntBASIC15.53■□□□□ 0.08
Upf3aQ3ULJ3 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC15.53■□□□□ 0.08
Upf3aQ3ULJ3 Hist1h2al-201ENSMUST00000091708 339 ntBASIC15.53■□□□□ 0.08
Upf3aQ3ULJ3 Ftl1-201ENSMUST00000094434 968 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Upf3aQ3ULJ3 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Upf3aQ3ULJ3 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Upf3aQ3ULJ3 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
Upf3aQ3ULJ3 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Upf3aQ3ULJ3 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Upf3aQ3ULJ3 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Upf3aQ3ULJ3 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Upf3aQ3ULJ3 Psmc3-202ENSMUST00000067663 1636 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Upf3aQ3ULJ3 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Upf3aQ3ULJ3 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Upf3aQ3ULJ3 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
Upf3aQ3ULJ3 Tmtc2-201ENSMUST00000061506 5629 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Upf3aQ3ULJ3 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Upf3aQ3ULJ3 Dmkn-204ENSMUST00000085691 2007 ntAPPRIS P4 TSL 1 (best) BASIC15.53■□□□□ 0.08
Upf3aQ3ULJ3 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
Upf3aQ3ULJ3 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Upf3aQ3ULJ3 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Upf3aQ3ULJ3 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Upf3aQ3ULJ3 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
Upf3aQ3ULJ3 Art3-205ENSMUST00000120193 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Upf3aQ3ULJ3 Tmem150b-202ENSMUST00000086364 2822 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Upf3aQ3ULJ3 Klhdc4-210ENSMUST00000174717 1662 ntTSL 5 BASIC15.52■□□□□ 0.08
Upf3aQ3ULJ3 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
Upf3aQ3ULJ3 Ctnnbip1-202ENSMUST00000105692 634 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Upf3aQ3ULJ3 Gm12859-201ENSMUST00000117834 427 ntBASIC15.52■□□□□ 0.08
Upf3aQ3ULJ3 Cdpf1-202ENSMUST00000125947 706 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
Upf3aQ3ULJ3 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Upf3aQ3ULJ3 Slc10a7-204ENSMUST00000209992 939 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Upf3aQ3ULJ3 Prrg2-207ENSMUST00000210500 922 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
Upf3aQ3ULJ3 Gm10188-201ENSMUST00000086544 720 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
Upf3aQ3ULJ3 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Upf3aQ3ULJ3 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Upf3aQ3ULJ3 Pex11b-207ENSMUST00000165842 1562 ntTSL 2 BASIC15.52■□□□□ 0.07
Upf3aQ3ULJ3 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Upf3aQ3ULJ3 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Upf3aQ3ULJ3 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Upf3aQ3ULJ3 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Upf3aQ3ULJ3 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Upf3aQ3ULJ3 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Upf3aQ3ULJ3 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Upf3aQ3ULJ3 Cyb5r1-201ENSMUST00000027726 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 48.8 ms