Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Gm5364-201ENSMUST00000216789 889 ntBASIC16.34■□□□□ 0.21
Prpf40aQ9R1C7 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Prpf40aQ9R1C7 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Prpf40aQ9R1C7 Adora2a-201ENSMUST00000105420 2596 ntAPPRIS P1 TSL 3 BASIC16.34■□□□□ 0.21
Prpf40aQ9R1C7 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Prpf40aQ9R1C7 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Prpf40aQ9R1C7 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC16.34■□□□□ 0.21
Prpf40aQ9R1C7 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Prpf40aQ9R1C7 6430710C18Rik-203ENSMUST00000136807 1540 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Prpf40aQ9R1C7 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Prpf40aQ9R1C7 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Prpf40aQ9R1C7 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Prpf40aQ9R1C7 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Prpf40aQ9R1C7 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Prpf40aQ9R1C7 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Prpf40aQ9R1C7 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Prpf40aQ9R1C7 AC122901.1-201ENSMUST00000214203 1790 ntBASIC16.33■□□□□ 0.21
Prpf40aQ9R1C7 Klhl34-201ENSMUST00000087157 1935 ntAPPRIS P1 BASIC16.33■□□□□ 0.21
Prpf40aQ9R1C7 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Prpf40aQ9R1C7 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Prpf40aQ9R1C7 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Prpf40aQ9R1C7 Padi4-201ENSMUST00000026381 2316 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Prpf40aQ9R1C7 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Prpf40aQ9R1C7 Mbtd1-202ENSMUST00000063718 3785 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Prpf40aQ9R1C7 Gm11434-201ENSMUST00000122379 629 ntBASIC16.33■□□□□ 0.2
Prpf40aQ9R1C7 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Prpf40aQ9R1C7 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Prpf40aQ9R1C7 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC16.33■□□□□ 0.2
Prpf40aQ9R1C7 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC16.33■□□□□ 0.2
Prpf40aQ9R1C7 Gm42790-201ENSMUST00000201268 969 ntBASIC16.33■□□□□ 0.2
Prpf40aQ9R1C7 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Prpf40aQ9R1C7 Gm8242-201ENSMUST00000193029 1420 ntBASIC16.33■□□□□ 0.2
Prpf40aQ9R1C7 Trib1-201ENSMUST00000067543 4330 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Prpf40aQ9R1C7 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Prpf40aQ9R1C7 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Prpf40aQ9R1C7 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC16.33■□□□□ 0.2
Prpf40aQ9R1C7 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Prpf40aQ9R1C7 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Prpf40aQ9R1C7 Acat2-203ENSMUST00000159697 1800 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Prpf40aQ9R1C7 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Prpf40aQ9R1C7 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Prpf40aQ9R1C7 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Prpf40aQ9R1C7 Btd-201ENSMUST00000090147 2324 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Prpf40aQ9R1C7 Ttc22-201ENSMUST00000047922 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Prpf40aQ9R1C7 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
Prpf40aQ9R1C7 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Prpf40aQ9R1C7 Map6-204ENSMUST00000127492 4920 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Prpf40aQ9R1C7 Pcdha8-201ENSMUST00000194038 5338 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Prpf40aQ9R1C7 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC16.32■□□□□ 0.2
Prpf40aQ9R1C7 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Prpf40aQ9R1C7 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
Prpf40aQ9R1C7 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC16.32■□□□□ 0.2
Prpf40aQ9R1C7 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
Prpf40aQ9R1C7 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Prpf40aQ9R1C7 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Prpf40aQ9R1C7 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
Prpf40aQ9R1C7 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Prpf40aQ9R1C7 Gm29361-201ENSMUST00000183323 2000 ntBASIC16.32■□□□□ 0.2
Prpf40aQ9R1C7 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC16.32■□□□□ 0.2
Prpf40aQ9R1C7 AC155714.1-201ENSMUST00000214033 956 ntTSL 5 BASIC16.32■□□□□ 0.2
Prpf40aQ9R1C7 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC16.32■□□□□ 0.2
Prpf40aQ9R1C7 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC16.32■□□□□ 0.2
Prpf40aQ9R1C7 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC16.32■□□□□ 0.2
Prpf40aQ9R1C7 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Prpf40aQ9R1C7 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Prpf40aQ9R1C7 Cyp4f37-201ENSMUST00000077639 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Prpf40aQ9R1C7 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Prpf40aQ9R1C7 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
Prpf40aQ9R1C7 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Prpf40aQ9R1C7 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Prpf40aQ9R1C7 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Prpf40aQ9R1C7 Fgfr2-207ENSMUST00000117872 4223 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Prpf40aQ9R1C7 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Prpf40aQ9R1C7 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Prpf40aQ9R1C7 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Prpf40aQ9R1C7 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Prpf40aQ9R1C7 Dis3-201ENSMUST00000042471 5150 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Prpf40aQ9R1C7 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Prpf40aQ9R1C7 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Prpf40aQ9R1C7 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC16.31■□□□□ 0.2
Prpf40aQ9R1C7 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Prpf40aQ9R1C7 Scube1-201ENSMUST00000016907 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Prpf40aQ9R1C7 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Prpf40aQ9R1C7 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC16.31■□□□□ 0.2
Prpf40aQ9R1C7 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC16.31■□□□□ 0.2
Prpf40aQ9R1C7 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Prpf40aQ9R1C7 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Prpf40aQ9R1C7 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC16.31■□□□□ 0.2
Prpf40aQ9R1C7 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Prpf40aQ9R1C7 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Prpf40aQ9R1C7 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Prpf40aQ9R1C7 Ralgapb-201ENSMUST00000046274 8366 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
Prpf40aQ9R1C7 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Prpf40aQ9R1C7 Ppip5k2-201ENSMUST00000042509 5882 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Prpf40aQ9R1C7 Cd82-202ENSMUST00000099696 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Prpf40aQ9R1C7 Iqgap1-201ENSMUST00000167377 7444 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Prpf40aQ9R1C7 Olfr718-ps1-203ENSMUST00000215102 4913 ntAPPRIS P5 TSL 5 BASIC16.3■□□□□ 0.2
Prpf40aQ9R1C7 Olfr1372-ps1-202ENSMUST00000203403 9812 ntTSL 5 BASIC16.3■□□□□ 0.2
Prpf40aQ9R1C7 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Prpf40aQ9R1C7 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 45.6 ms