Protein–RNA interactions for Protein: Q9EQM3

Nkx2-4, Homeobox protein Nkx-2.4, mousemouse

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-4Q9EQM3 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC15.15■□□□□ 0.02
Nkx2-4Q9EQM3 4930518P08Rik-201ENSMUST00000221281 1187 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Nkx2-4Q9EQM3 AC121804.3-201ENSMUST00000223420 295 ntBASIC15.15■□□□□ 0.02
Nkx2-4Q9EQM3 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Nkx2-4Q9EQM3 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Nkx2-4Q9EQM3 Zbtb7c-201ENSMUST00000058997 4569 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Nkx2-4Q9EQM3 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Nkx2-4Q9EQM3 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Nkx2-4Q9EQM3 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Nkx2-4Q9EQM3 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Nkx2-4Q9EQM3 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Nkx2-4Q9EQM3 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Nkx2-4Q9EQM3 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Nkx2-4Q9EQM3 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC15.15■□□□□ 0.02
Nkx2-4Q9EQM3 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Nkx2-4Q9EQM3 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Nkx2-4Q9EQM3 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Nkx2-4Q9EQM3 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Nkx2-4Q9EQM3 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC15.14■□□□□ 0.01
Nkx2-4Q9EQM3 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
Nkx2-4Q9EQM3 B3gnt6-201ENSMUST00000098278 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Nkx2-4Q9EQM3 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Nkx2-4Q9EQM3 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC15.14■□□□□ 0.01
Nkx2-4Q9EQM3 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
Nkx2-4Q9EQM3 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Nkx2-4Q9EQM3 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Nkx2-4Q9EQM3 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Nkx2-4Q9EQM3 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
Nkx2-4Q9EQM3 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
Nkx2-4Q9EQM3 1700037F24Rik-201ENSMUST00000181254 973 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Nkx2-4Q9EQM3 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
Nkx2-4Q9EQM3 Ilkap-208ENSMUST00000187306 377 ntTSL 5 BASIC15.14■□□□□ 0.01
Nkx2-4Q9EQM3 2810429I04Rik-210ENSMUST00000189464 868 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Nkx2-4Q9EQM3 Gm28198-201ENSMUST00000190938 471 ntTSL 3 BASIC15.14■□□□□ 0.01
Nkx2-4Q9EQM3 Agrp-202ENSMUST00000194091 734 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
Nkx2-4Q9EQM3 AC150560.1-201ENSMUST00000227731 1187 ntBASIC15.14■□□□□ 0.01
Nkx2-4Q9EQM3 AC156016.3-201ENSMUST00000228623 344 ntBASIC15.14■□□□□ 0.01
Nkx2-4Q9EQM3 Naa10-201ENSMUST00000033763 962 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Nkx2-4Q9EQM3 Gm11149-201ENSMUST00000068730 1250 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Nkx2-4Q9EQM3 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Nkx2-4Q9EQM3 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Nkx2-4Q9EQM3 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC15.14■□□□□ 0.01
Nkx2-4Q9EQM3 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Nkx2-4Q9EQM3 Tsnax-201ENSMUST00000075896 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Nkx2-4Q9EQM3 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Nkx2-4Q9EQM3 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Nkx2-4Q9EQM3 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Nkx2-4Q9EQM3 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Nkx2-4Q9EQM3 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Nkx2-4Q9EQM3 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Nkx2-4Q9EQM3 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Nkx2-4Q9EQM3 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC15.13■□□□□ 0.01
Nkx2-4Q9EQM3 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Nkx2-4Q9EQM3 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Nkx2-4Q9EQM3 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Nkx2-4Q9EQM3 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Nkx2-4Q9EQM3 Gm15678-201ENSMUST00000117573 960 ntBASIC15.13■□□□□ 0.01
Nkx2-4Q9EQM3 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC15.13■□□□□ 0.01
Nkx2-4Q9EQM3 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Nkx2-4Q9EQM3 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Nkx2-4Q9EQM3 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Nkx2-4Q9EQM3 Gm44799-201ENSMUST00000207639 1202 ntBASIC15.13■□□□□ 0.01
Nkx2-4Q9EQM3 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC15.13■□□□□ 0.01
Nkx2-4Q9EQM3 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Nkx2-4Q9EQM3 Alkbh7-202ENSMUST00000074141 736 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Nkx2-4Q9EQM3 Mir125a-201ENSMUST00000083545 68 ntBASIC15.13■□□□□ 0.01
Nkx2-4Q9EQM3 Sdf4-202ENSMUST00000097734 973 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Nkx2-4Q9EQM3 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Nkx2-4Q9EQM3 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Nkx2-4Q9EQM3 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC15.13■□□□□ 0.01
Nkx2-4Q9EQM3 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Nkx2-4Q9EQM3 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Nkx2-4Q9EQM3 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Nkx2-4Q9EQM3 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Nkx2-4Q9EQM3 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC15.13■□□□□ 0.01
Nkx2-4Q9EQM3 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Nkx2-4Q9EQM3 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Nkx2-4Q9EQM3 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Nkx2-4Q9EQM3 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Nkx2-4Q9EQM3 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Nkx2-4Q9EQM3 Gm4219-201ENSMUST00000168140 2143 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Nkx2-4Q9EQM3 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Nkx2-4Q9EQM3 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Nkx2-4Q9EQM3 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Nkx2-4Q9EQM3 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC15.12■□□□□ 0.01
Nkx2-4Q9EQM3 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Nkx2-4Q9EQM3 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Nkx2-4Q9EQM3 Fggy-203ENSMUST00000107091 1395 ntTSL 5 BASIC15.12■□□□□ 0.01
Nkx2-4Q9EQM3 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Nkx2-4Q9EQM3 Eif2b1-201ENSMUST00000031334 2013 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Nkx2-4Q9EQM3 Fbxo25-201ENSMUST00000043520 2012 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Nkx2-4Q9EQM3 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Nkx2-4Q9EQM3 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Nkx2-4Q9EQM3 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Nkx2-4Q9EQM3 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Nkx2-4Q9EQM3 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Nkx2-4Q9EQM3 Hykk-201ENSMUST00000039742 5110 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Nkx2-4Q9EQM3 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Nkx2-4Q9EQM3 Tpd52l2-203ENSMUST00000108799 985 ntTSL 5 BASIC15.12■□□□□ 0.01
Nkx2-4Q9EQM3 Mrps10-202ENSMUST00000119841 1113 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 39.1 ms