Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Smc1aQ9CU62 Gm8344-201ENSMUST00000119813 856 ntBASIC16.63■□□□□ 0.25
Smc1aQ9CU62 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC16.63■□□□□ 0.25
Smc1aQ9CU62 Haghl-211ENSMUST00000150324 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Smc1aQ9CU62 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Smc1aQ9CU62 Gm10576-201ENSMUST00000191927 825 ntBASIC16.63■□□□□ 0.25
Smc1aQ9CU62 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC16.63■□□□□ 0.25
Smc1aQ9CU62 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC16.63■□□□□ 0.25
Smc1aQ9CU62 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC16.63■□□□□ 0.25
Smc1aQ9CU62 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Smc1aQ9CU62 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Smc1aQ9CU62 Tspan15-201ENSMUST00000047883 3638 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Smc1aQ9CU62 Gm42743-201ENSMUST00000051089 1511 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Smc1aQ9CU62 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Smc1aQ9CU62 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Smc1aQ9CU62 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Smc1aQ9CU62 Zfp553-202ENSMUST00000106312 3342 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Smc1aQ9CU62 Fam208b-201ENSMUST00000096069 8338 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Smc1aQ9CU62 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
Smc1aQ9CU62 Dok7-201ENSMUST00000050709 2498 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Smc1aQ9CU62 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Smc1aQ9CU62 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Smc1aQ9CU62 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Smc1aQ9CU62 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC16.62■□□□□ 0.25
Smc1aQ9CU62 Col7a1-202ENSMUST00000112070 9250 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Smc1aQ9CU62 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Smc1aQ9CU62 Josd1-201ENSMUST00000023061 3394 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Smc1aQ9CU62 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Smc1aQ9CU62 Prmt7-203ENSMUST00000109297 1094 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Smc1aQ9CU62 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Smc1aQ9CU62 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Smc1aQ9CU62 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC16.62■□□□□ 0.25
Smc1aQ9CU62 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Smc1aQ9CU62 H2-Bl-211ENSMUST00000195838 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Smc1aQ9CU62 Gm45167-201ENSMUST00000208007 322 ntBASIC16.62■□□□□ 0.25
Smc1aQ9CU62 Gm7229-201ENSMUST00000214719 1007 ntBASIC16.62■□□□□ 0.25
Smc1aQ9CU62 Higd1a-206ENSMUST00000215300 605 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
Smc1aQ9CU62 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
Smc1aQ9CU62 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Smc1aQ9CU62 Kcnq2-220ENSMUST00000197015 8031 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Smc1aQ9CU62 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
Smc1aQ9CU62 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Smc1aQ9CU62 Nacc2-201ENSMUST00000028300 6378 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Smc1aQ9CU62 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Smc1aQ9CU62 Rbm33-202ENSMUST00000059644 9510 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
Smc1aQ9CU62 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Smc1aQ9CU62 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Smc1aQ9CU62 Cgnl1-203ENSMUST00000122065 4487 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Smc1aQ9CU62 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Smc1aQ9CU62 Il11ra1-201ENSMUST00000098132 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Smc1aQ9CU62 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Smc1aQ9CU62 Mib2-201ENSMUST00000103176 3642 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Smc1aQ9CU62 Gm43399-201ENSMUST00000202546 2374 ntBASIC16.62■□□□□ 0.25
Smc1aQ9CU62 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Smc1aQ9CU62 Ppp2r5e-205ENSMUST00000220035 3135 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Smc1aQ9CU62 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Smc1aQ9CU62 Gm16796-201ENSMUST00000126086 3172 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Smc1aQ9CU62 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Smc1aQ9CU62 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Smc1aQ9CU62 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Smc1aQ9CU62 Tmem39a-214ENSMUST00000171687 2667 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Smc1aQ9CU62 Gm4756-202ENSMUST00000208039 2344 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Smc1aQ9CU62 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Smc1aQ9CU62 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Smc1aQ9CU62 Paxx-201ENSMUST00000114261 981 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Smc1aQ9CU62 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC16.61■□□□□ 0.25
Smc1aQ9CU62 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC16.61■□□□□ 0.25
Smc1aQ9CU62 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
Smc1aQ9CU62 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Smc1aQ9CU62 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Smc1aQ9CU62 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Smc1aQ9CU62 Gm15500-202ENSMUST00000071641 1019 ntBASIC16.61■□□□□ 0.25
Smc1aQ9CU62 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC16.61■□□□□ 0.25
Smc1aQ9CU62 Arl5b-202ENSMUST00000069870 6981 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Smc1aQ9CU62 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Smc1aQ9CU62 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Smc1aQ9CU62 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Smc1aQ9CU62 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Smc1aQ9CU62 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Smc1aQ9CU62 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC16.61■□□□□ 0.25
Smc1aQ9CU62 Thumpd1-201ENSMUST00000033236 2689 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Smc1aQ9CU62 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Smc1aQ9CU62 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Smc1aQ9CU62 Cdr2l-201ENSMUST00000053288 3700 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Smc1aQ9CU62 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Smc1aQ9CU62 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Smc1aQ9CU62 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Smc1aQ9CU62 Bmper-201ENSMUST00000071982 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Smc1aQ9CU62 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Smc1aQ9CU62 Abr-203ENSMUST00000094012 5236 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Smc1aQ9CU62 Prrt2-201ENSMUST00000159916 2501 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Smc1aQ9CU62 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Smc1aQ9CU62 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Smc1aQ9CU62 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Smc1aQ9CU62 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Smc1aQ9CU62 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC16.6■□□□□ 0.25
Smc1aQ9CU62 Josd2-202ENSMUST00000117324 858 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Smc1aQ9CU62 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC16.6■□□□□ 0.25
Smc1aQ9CU62 Gm17271-201ENSMUST00000165535 355 ntBASIC16.6■□□□□ 0.25
Smc1aQ9CU62 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 32.5 ms