Protein–RNA interactions for Protein: Q8R1F9

Rpp40, Ribonuclease P protein subunit p40, mousemouse

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpp40Q8R1F9 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Rpp40Q8R1F9 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Rpp40Q8R1F9 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Rpp40Q8R1F9 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Rpp40Q8R1F9 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Rpp40Q8R1F9 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Rpp40Q8R1F9 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Rpp40Q8R1F9 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC15.9■□□□□ 0.14
Rpp40Q8R1F9 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC15.9■□□□□ 0.14
Rpp40Q8R1F9 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC15.9■□□□□ 0.14
Rpp40Q8R1F9 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
Rpp40Q8R1F9 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Rpp40Q8R1F9 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Rpp40Q8R1F9 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Rpp40Q8R1F9 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Rpp40Q8R1F9 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Rpp40Q8R1F9 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Rpp40Q8R1F9 Tmtc2-201ENSMUST00000061506 5629 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Rpp40Q8R1F9 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC15.89■□□□□ 0.13
Rpp40Q8R1F9 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Rpp40Q8R1F9 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Rpp40Q8R1F9 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC15.89■□□□□ 0.13
Rpp40Q8R1F9 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Rpp40Q8R1F9 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Rpp40Q8R1F9 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Rpp40Q8R1F9 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Rpp40Q8R1F9 6430548M08Rik-201ENSMUST00000034281 5564 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
Rpp40Q8R1F9 Gm2810-201ENSMUST00000118681 990 ntBASIC15.89■□□□□ 0.13
Rpp40Q8R1F9 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Rpp40Q8R1F9 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC15.89■□□□□ 0.13
Rpp40Q8R1F9 Gm16163-201ENSMUST00000161868 1119 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Rpp40Q8R1F9 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Rpp40Q8R1F9 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
Rpp40Q8R1F9 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
Rpp40Q8R1F9 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Rpp40Q8R1F9 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Rpp40Q8R1F9 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Rpp40Q8R1F9 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Rpp40Q8R1F9 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Rpp40Q8R1F9 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Rpp40Q8R1F9 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Rpp40Q8R1F9 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
Rpp40Q8R1F9 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Rpp40Q8R1F9 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC15.89■□□□□ 0.13
Rpp40Q8R1F9 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Rpp40Q8R1F9 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Rpp40Q8R1F9 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Rpp40Q8R1F9 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Rpp40Q8R1F9 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Rpp40Q8R1F9 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Rpp40Q8R1F9 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC15.88■□□□□ 0.13
Rpp40Q8R1F9 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Rpp40Q8R1F9 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC15.88■□□□□ 0.13
Rpp40Q8R1F9 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Rpp40Q8R1F9 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC15.88■□□□□ 0.13
Rpp40Q8R1F9 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC15.88■□□□□ 0.13
Rpp40Q8R1F9 Gm4691-201ENSMUST00000182339 1000 ntBASIC15.88■□□□□ 0.13
Rpp40Q8R1F9 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Rpp40Q8R1F9 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Rpp40Q8R1F9 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Rpp40Q8R1F9 Gm2451-201ENSMUST00000199447 999 ntBASIC15.88■□□□□ 0.13
Rpp40Q8R1F9 Gm10290-201ENSMUST00000200451 999 ntBASIC15.88■□□□□ 0.13
Rpp40Q8R1F9 Gm5312-201ENSMUST00000203728 547 ntBASIC15.88■□□□□ 0.13
Rpp40Q8R1F9 Gm33785-201ENSMUST00000222961 886 ntTSL 5 BASIC15.88■□□□□ 0.13
Rpp40Q8R1F9 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Rpp40Q8R1F9 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
Rpp40Q8R1F9 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Rpp40Q8R1F9 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Rpp40Q8R1F9 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
Rpp40Q8R1F9 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Rpp40Q8R1F9 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Rpp40Q8R1F9 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Rpp40Q8R1F9 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Rpp40Q8R1F9 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC15.88■□□□□ 0.13
Rpp40Q8R1F9 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Rpp40Q8R1F9 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Rpp40Q8R1F9 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Rpp40Q8R1F9 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
Rpp40Q8R1F9 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
Rpp40Q8R1F9 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Rpp40Q8R1F9 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Rpp40Q8R1F9 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
Rpp40Q8R1F9 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
Rpp40Q8R1F9 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Rpp40Q8R1F9 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Rpp40Q8R1F9 Tex22-202ENSMUST00000109729 735 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Rpp40Q8R1F9 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC15.87■□□□□ 0.13
Rpp40Q8R1F9 Gm8749-201ENSMUST00000117737 331 ntBASIC15.87■□□□□ 0.13
Rpp40Q8R1F9 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Rpp40Q8R1F9 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC15.87■□□□□ 0.13
Rpp40Q8R1F9 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
Rpp40Q8R1F9 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC15.87■□□□□ 0.13
Rpp40Q8R1F9 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Rpp40Q8R1F9 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC15.87■□□□□ 0.13
Rpp40Q8R1F9 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Rpp40Q8R1F9 G630022F23Rik-201ENSMUST00000202923 3627 ntBASIC15.87■□□□□ 0.13
Rpp40Q8R1F9 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
Rpp40Q8R1F9 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Rpp40Q8R1F9 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
Rpp40Q8R1F9 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Retrieved 100 of 76,532 protein–RNA pairs in 46.8 ms