Protein–RNA interactions for Protein: Q8C8B0

Alx1, ALX homeobox protein 1, mousemouse

Predictions only

Length 326 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Alx1Q8C8B0 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Alx1Q8C8B0 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Alx1Q8C8B0 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Alx1Q8C8B0 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Alx1Q8C8B0 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Alx1Q8C8B0 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Alx1Q8C8B0 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Alx1Q8C8B0 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC17.31■□□□□ 0.36
Alx1Q8C8B0 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Alx1Q8C8B0 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Alx1Q8C8B0 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Alx1Q8C8B0 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Alx1Q8C8B0 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC17.3■□□□□ 0.36
Alx1Q8C8B0 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Alx1Q8C8B0 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Alx1Q8C8B0 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Alx1Q8C8B0 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Alx1Q8C8B0 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Alx1Q8C8B0 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Alx1Q8C8B0 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Alx1Q8C8B0 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Alx1Q8C8B0 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Alx1Q8C8B0 Aldh1b1-201ENSMUST00000044384 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Alx1Q8C8B0 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Alx1Q8C8B0 Gm11960-202ENSMUST00000181063 2858 ntBASIC17.3■□□□□ 0.36
Alx1Q8C8B0 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Alx1Q8C8B0 U2af1l4-216ENSMUST00000166510 835 ntTSL 5 BASIC17.3■□□□□ 0.36
Alx1Q8C8B0 Gm9182-201ENSMUST00000217829 639 ntBASIC17.3■□□□□ 0.36
Alx1Q8C8B0 AC158529.1-201ENSMUST00000223618 239 ntBASIC17.3■□□□□ 0.36
Alx1Q8C8B0 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC17.3■□□□□ 0.36
Alx1Q8C8B0 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Alx1Q8C8B0 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Alx1Q8C8B0 Elk4-201ENSMUST00000027696 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Alx1Q8C8B0 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Alx1Q8C8B0 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC17.3■□□□□ 0.36
Alx1Q8C8B0 Disp2-202ENSMUST00000063975 1505 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Alx1Q8C8B0 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Alx1Q8C8B0 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Alx1Q8C8B0 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Alx1Q8C8B0 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Alx1Q8C8B0 Padi4-201ENSMUST00000026381 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Alx1Q8C8B0 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC17.3■□□□□ 0.36
Alx1Q8C8B0 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Alx1Q8C8B0 Dtd2-201ENSMUST00000021339 2564 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Alx1Q8C8B0 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Alx1Q8C8B0 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Alx1Q8C8B0 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Alx1Q8C8B0 Dpp7-201ENSMUST00000028332 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Alx1Q8C8B0 Aifm1-202ENSMUST00000114945 2221 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Alx1Q8C8B0 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Alx1Q8C8B0 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Alx1Q8C8B0 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Alx1Q8C8B0 Aanat-205ENSMUST00000153476 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Alx1Q8C8B0 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Alx1Q8C8B0 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Alx1Q8C8B0 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Alx1Q8C8B0 Gm13015-201ENSMUST00000118674 204 ntBASIC17.29■□□□□ 0.36
Alx1Q8C8B0 Cmc2-202ENSMUST00000128304 394 ntTSL 5 BASIC17.29■□□□□ 0.36
Alx1Q8C8B0 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC17.29■□□□□ 0.36
Alx1Q8C8B0 AC155937.1-202ENSMUST00000156229 621 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
Alx1Q8C8B0 Gm8116-201ENSMUST00000182917 1201 ntBASIC17.29■□□□□ 0.36
Alx1Q8C8B0 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC17.29■□□□□ 0.36
Alx1Q8C8B0 Commd9-201ENSMUST00000028584 1191 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Alx1Q8C8B0 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Alx1Q8C8B0 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Alx1Q8C8B0 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Alx1Q8C8B0 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Alx1Q8C8B0 Myog-201ENSMUST00000027730 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Alx1Q8C8B0 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Alx1Q8C8B0 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Alx1Q8C8B0 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Alx1Q8C8B0 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Alx1Q8C8B0 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Alx1Q8C8B0 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Alx1Q8C8B0 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Alx1Q8C8B0 A530083I20Rik-203ENSMUST00000214426 1855 ntTSL 5 BASIC17.29■□□□□ 0.36
Alx1Q8C8B0 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Alx1Q8C8B0 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Alx1Q8C8B0 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Alx1Q8C8B0 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Alx1Q8C8B0 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Alx1Q8C8B0 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC17.28■□□□□ 0.36
Alx1Q8C8B0 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Alx1Q8C8B0 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Alx1Q8C8B0 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Alx1Q8C8B0 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Alx1Q8C8B0 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Alx1Q8C8B0 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Alx1Q8C8B0 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Alx1Q8C8B0 Gm13883-202ENSMUST00000151310 1156 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Alx1Q8C8B0 Il31-201ENSMUST00000031389 806 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Alx1Q8C8B0 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Alx1Q8C8B0 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Alx1Q8C8B0 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Alx1Q8C8B0 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Alx1Q8C8B0 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Alx1Q8C8B0 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC17.28■□□□□ 0.36
Alx1Q8C8B0 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Alx1Q8C8B0 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Alx1Q8C8B0 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms