Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC16.45■□□□□ 0.22
Trim47Q8C0E3 Gm27920-201ENSMUST00000183953 96 ntBASIC16.45■□□□□ 0.22
Trim47Q8C0E3 Gm5312-201ENSMUST00000203728 547 ntBASIC16.45■□□□□ 0.22
Trim47Q8C0E3 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC16.45■□□□□ 0.22
Trim47Q8C0E3 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Trim47Q8C0E3 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
Trim47Q8C0E3 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC16.45■□□□□ 0.22
Trim47Q8C0E3 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Trim47Q8C0E3 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
Trim47Q8C0E3 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Trim47Q8C0E3 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim47Q8C0E3 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim47Q8C0E3 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim47Q8C0E3 G630022F23Rik-201ENSMUST00000202923 3627 ntBASIC16.45■□□□□ 0.22
Trim47Q8C0E3 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim47Q8C0E3 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Trim47Q8C0E3 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim47Q8C0E3 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Trim47Q8C0E3 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Trim47Q8C0E3 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim47Q8C0E3 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim47Q8C0E3 Lrrc7-204ENSMUST00000199890 6326 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Trim47Q8C0E3 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim47Q8C0E3 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim47Q8C0E3 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim47Q8C0E3 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC16.44■□□□□ 0.22
Trim47Q8C0E3 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim47Q8C0E3 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim47Q8C0E3 Mtif3-203ENSMUST00000110564 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim47Q8C0E3 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim47Q8C0E3 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim47Q8C0E3 Gm11543-201ENSMUST00000120758 370 ntBASIC16.44■□□□□ 0.22
Trim47Q8C0E3 Cmc2-202ENSMUST00000128304 394 ntTSL 5 BASIC16.44■□□□□ 0.22
Trim47Q8C0E3 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
Trim47Q8C0E3 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC16.44■□□□□ 0.22
Trim47Q8C0E3 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim47Q8C0E3 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim47Q8C0E3 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC16.44■□□□□ 0.22
Trim47Q8C0E3 Cyp4f18-201ENSMUST00000003574 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim47Q8C0E3 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim47Q8C0E3 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim47Q8C0E3 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim47Q8C0E3 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim47Q8C0E3 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim47Q8C0E3 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC16.44■□□□□ 0.22
Trim47Q8C0E3 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim47Q8C0E3 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim47Q8C0E3 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim47Q8C0E3 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Trim47Q8C0E3 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
Trim47Q8C0E3 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Trim47Q8C0E3 Trav13-3-201ENSMUST00000117226 336 ntBASIC16.43■□□□□ 0.22
Trim47Q8C0E3 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Trim47Q8C0E3 Gm16163-201ENSMUST00000161868 1119 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Trim47Q8C0E3 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Trim47Q8C0E3 Gm33785-201ENSMUST00000222961 886 ntTSL 5 BASIC16.43■□□□□ 0.22
Trim47Q8C0E3 AC154621.1-201ENSMUST00000226155 1119 ntBASIC16.43■□□□□ 0.22
Trim47Q8C0E3 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Trim47Q8C0E3 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Trim47Q8C0E3 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim47Q8C0E3 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim47Q8C0E3 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim47Q8C0E3 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim47Q8C0E3 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Trim47Q8C0E3 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim47Q8C0E3 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim47Q8C0E3 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim47Q8C0E3 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim47Q8C0E3 Prss22-201ENSMUST00000041649 1323 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim47Q8C0E3 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim47Q8C0E3 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
Trim47Q8C0E3 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim47Q8C0E3 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim47Q8C0E3 Ankrd44-210ENSMUST00000179030 6140 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim47Q8C0E3 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim47Q8C0E3 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim47Q8C0E3 Ydjc-203ENSMUST00000115706 3097 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Trim47Q8C0E3 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Trim47Q8C0E3 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim47Q8C0E3 Gm16425-201ENSMUST00000118143 3130 ntBASIC16.42■□□□□ 0.22
Trim47Q8C0E3 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Trim47Q8C0E3 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim47Q8C0E3 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim47Q8C0E3 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Trim47Q8C0E3 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim47Q8C0E3 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim47Q8C0E3 Tex22-202ENSMUST00000109729 735 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim47Q8C0E3 Gm2810-201ENSMUST00000118681 990 ntBASIC16.42■□□□□ 0.22
Trim47Q8C0E3 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Trim47Q8C0E3 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
Trim47Q8C0E3 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim47Q8C0E3 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC16.42■□□□□ 0.22
Trim47Q8C0E3 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim47Q8C0E3 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim47Q8C0E3 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Trim47Q8C0E3 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Trim47Q8C0E3 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim47Q8C0E3 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim47Q8C0E3 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim47Q8C0E3 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 25.8 ms