Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC17.5■□□□□ 0.39
Trim56Q80VI1 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC17.5■□□□□ 0.39
Trim56Q80VI1 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC17.5■□□□□ 0.39
Trim56Q80VI1 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC17.5■□□□□ 0.39
Trim56Q80VI1 Gm8396-201ENSMUST00000057361 823 ntBASIC17.5■□□□□ 0.39
Trim56Q80VI1 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim56Q80VI1 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Trim56Q80VI1 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Trim56Q80VI1 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim56Q80VI1 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Trim56Q80VI1 Fbxo25-201ENSMUST00000043520 2012 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim56Q80VI1 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Trim56Q80VI1 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim56Q80VI1 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim56Q80VI1 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim56Q80VI1 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim56Q80VI1 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC17.5■□□□□ 0.39
Trim56Q80VI1 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim56Q80VI1 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim56Q80VI1 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim56Q80VI1 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim56Q80VI1 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Trim56Q80VI1 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
Trim56Q80VI1 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Trim56Q80VI1 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim56Q80VI1 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim56Q80VI1 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim56Q80VI1 Gm2810-201ENSMUST00000118681 990 ntBASIC17.49■□□□□ 0.39
Trim56Q80VI1 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC17.49■□□□□ 0.39
Trim56Q80VI1 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Trim56Q80VI1 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC17.49■□□□□ 0.39
Trim56Q80VI1 Tmem217-202ENSMUST00000168339 812 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim56Q80VI1 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC17.49■□□□□ 0.39
Trim56Q80VI1 Gm33785-201ENSMUST00000222961 886 ntTSL 5 BASIC17.49■□□□□ 0.39
Trim56Q80VI1 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim56Q80VI1 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim56Q80VI1 Mettl2-201ENSMUST00000021030 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim56Q80VI1 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC17.49■□□□□ 0.39
Trim56Q80VI1 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim56Q80VI1 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim56Q80VI1 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim56Q80VI1 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Trim56Q80VI1 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Trim56Q80VI1 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim56Q80VI1 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim56Q80VI1 Rtn3-201ENSMUST00000025667 2841 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim56Q80VI1 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim56Q80VI1 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim56Q80VI1 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim56Q80VI1 Adal-201ENSMUST00000028702 2471 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Trim56Q80VI1 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim56Q80VI1 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim56Q80VI1 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC17.48■□□□□ 0.39
Trim56Q80VI1 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Trim56Q80VI1 Gm37305-201ENSMUST00000195714 4279 ntBASIC17.48■□□□□ 0.39
Trim56Q80VI1 Tex22-202ENSMUST00000109729 735 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim56Q80VI1 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Trim56Q80VI1 Cd3g-201ENSMUST00000002101 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim56Q80VI1 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC17.48■□□□□ 0.39
Trim56Q80VI1 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Trim56Q80VI1 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
Trim56Q80VI1 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim56Q80VI1 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim56Q80VI1 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Trim56Q80VI1 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim56Q80VI1 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Trim56Q80VI1 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim56Q80VI1 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Trim56Q80VI1 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Trim56Q80VI1 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim56Q80VI1 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim56Q80VI1 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Trim56Q80VI1 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim56Q80VI1 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC17.47■□□□□ 0.39
Trim56Q80VI1 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim56Q80VI1 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Trim56Q80VI1 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC17.47■□□□□ 0.39
Trim56Q80VI1 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim56Q80VI1 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC17.47■□□□□ 0.39
Trim56Q80VI1 Gm14701-201ENSMUST00000117156 348 ntBASIC17.47■□□□□ 0.39
Trim56Q80VI1 Gm11543-201ENSMUST00000120758 370 ntBASIC17.47■□□□□ 0.39
Trim56Q80VI1 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Trim56Q80VI1 Gm5479-201ENSMUST00000160578 435 ntBASIC17.47■□□□□ 0.39
Trim56Q80VI1 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC17.47■□□□□ 0.39
Trim56Q80VI1 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC17.47■□□□□ 0.39
Trim56Q80VI1 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Trim56Q80VI1 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
Trim56Q80VI1 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim56Q80VI1 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Trim56Q80VI1 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim56Q80VI1 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim56Q80VI1 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim56Q80VI1 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim56Q80VI1 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim56Q80VI1 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim56Q80VI1 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim56Q80VI1 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim56Q80VI1 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trim56Q80VI1 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trim56Q80VI1 Trp53i11-201ENSMUST00000090554 2654 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 30.1 ms