Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Sh3rf1Q69ZI1 2410018L13Rik-205ENSMUST00000149246 3370 ntTSL 2 BASIC15.08■□□□□ 0
Sh3rf1Q69ZI1 Usp53-201ENSMUST00000090379 6185 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Sh3rf1Q69ZI1 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Sh3rf1Q69ZI1 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC15.08■□□□□ 0
Sh3rf1Q69ZI1 AC162938.1-201ENSMUST00000213140 2323 ntBASIC15.08■□□□□ 0
Sh3rf1Q69ZI1 Galnt13-202ENSMUST00000112634 7639 ntTSL 1 (best) BASIC15.07■□□□□ 0
Sh3rf1Q69ZI1 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC15.07■□□□□ 0
Sh3rf1Q69ZI1 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Sh3rf1Q69ZI1 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC15.07■□□□□ 0
Sh3rf1Q69ZI1 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Sh3rf1Q69ZI1 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Sh3rf1Q69ZI1 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Sh3rf1Q69ZI1 Tmem184c-201ENSMUST00000034030 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Sh3rf1Q69ZI1 Fam208a-201ENSMUST00000022450 7590 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Sh3rf1Q69ZI1 Dlc1-203ENSMUST00000098826 6241 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Sh3rf1Q69ZI1 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Sh3rf1Q69ZI1 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
Sh3rf1Q69ZI1 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC15.07■□□□□ 0
Sh3rf1Q69ZI1 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Sh3rf1Q69ZI1 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC15.07■□□□□ 0
Sh3rf1Q69ZI1 Gm6736-201ENSMUST00000166583 948 ntBASIC15.07■□□□□ 0
Sh3rf1Q69ZI1 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC15.07■□□□□ 0
Sh3rf1Q69ZI1 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC15.07■□□□□ 0
Sh3rf1Q69ZI1 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Sh3rf1Q69ZI1 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Sh3rf1Q69ZI1 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Sh3rf1Q69ZI1 Gm38058-201ENSMUST00000194323 4368 ntBASIC15.07■□□□□ 0
Sh3rf1Q69ZI1 Nek1-202ENSMUST00000120689 5478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Sh3rf1Q69ZI1 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Sh3rf1Q69ZI1 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Sh3rf1Q69ZI1 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Sh3rf1Q69ZI1 Evpl-201ENSMUST00000037007 6384 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
Sh3rf1Q69ZI1 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Sh3rf1Q69ZI1 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
Sh3rf1Q69ZI1 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Sh3rf1Q69ZI1 Depdc1b-201ENSMUST00000051594 2563 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
Sh3rf1Q69ZI1 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Sh3rf1Q69ZI1 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC15.07■□□□□ 0
Sh3rf1Q69ZI1 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC15.07■□□□□ 0
Sh3rf1Q69ZI1 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Sh3rf1Q69ZI1 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC15.07■□□□□ 0
Sh3rf1Q69ZI1 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
Sh3rf1Q69ZI1 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Sh3rf1Q69ZI1 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Sh3rf1Q69ZI1 Ncln-202ENSMUST00000118498 2841 ntAPPRIS ALT1 TSL 5 BASIC15.07■□□□□ 0
Sh3rf1Q69ZI1 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Sh3rf1Q69ZI1 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC15.07■□□□□ 0
Sh3rf1Q69ZI1 Emb-201ENSMUST00000022242 2923 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Sh3rf1Q69ZI1 AC122901.1-201ENSMUST00000214203 1790 ntBASIC15.06■□□□□ 0
Sh3rf1Q69ZI1 Samd14-201ENSMUST00000055947 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Sh3rf1Q69ZI1 Slc25a21-201ENSMUST00000044634 2609 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
Sh3rf1Q69ZI1 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Sh3rf1Q69ZI1 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Sh3rf1Q69ZI1 Gm21451-201ENSMUST00000111062 2775 ntBASIC15.06■□□□□ 0
Sh3rf1Q69ZI1 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Sh3rf1Q69ZI1 Thnsl2-202ENSMUST00000160918 2077 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Sh3rf1Q69ZI1 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC15.06■□□□□ 0
Sh3rf1Q69ZI1 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC15.06■□□□□ 0
Sh3rf1Q69ZI1 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
Sh3rf1Q69ZI1 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC15.06■□□□□ 0
Sh3rf1Q69ZI1 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC15.06■□□□□ 0
Sh3rf1Q69ZI1 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC15.06■□□□□ 0
Sh3rf1Q69ZI1 Gm43575-201ENSMUST00000196420 516 ntBASIC15.06■□□□□ 0
Sh3rf1Q69ZI1 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC15.06■□□□□ 0
Sh3rf1Q69ZI1 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Sh3rf1Q69ZI1 Fbxo21-201ENSMUST00000035579 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Sh3rf1Q69ZI1 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC15.06■□□□□ 0
Sh3rf1Q69ZI1 Rbbp8nl-201ENSMUST00000038529 2319 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Sh3rf1Q69ZI1 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Sh3rf1Q69ZI1 Rara-203ENSMUST00000107474 2380 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
Sh3rf1Q69ZI1 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Sh3rf1Q69ZI1 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Sh3rf1Q69ZI1 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC15.06■□□□□ 0
Sh3rf1Q69ZI1 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Sh3rf1Q69ZI1 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
Sh3rf1Q69ZI1 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Sh3rf1Q69ZI1 Dgkq-201ENSMUST00000053913 4938 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Sh3rf1Q69ZI1 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC15.06■□□□□ 0
Sh3rf1Q69ZI1 Gm38391-201ENSMUST00000191720 4069 ntBASIC15.06■□□□□ 0
Sh3rf1Q69ZI1 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Sh3rf1Q69ZI1 Gm43205-201ENSMUST00000198622 1968 ntBASIC15.05■□□□□ 0
Sh3rf1Q69ZI1 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ 0
Sh3rf1Q69ZI1 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC15.05■□□□□ 0
Sh3rf1Q69ZI1 Smo-201ENSMUST00000001812 3779 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Sh3rf1Q69ZI1 Gm45546-201ENSMUST00000211053 2394 ntBASIC15.05■□□□□ 0
Sh3rf1Q69ZI1 Zmym3-201ENSMUST00000063577 6057 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ 0
Sh3rf1Q69ZI1 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
Sh3rf1Q69ZI1 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ 0
Sh3rf1Q69ZI1 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Sh3rf1Q69ZI1 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC15.05■□□□□ -0
Sh3rf1Q69ZI1 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC15.05■□□□□ -0
Sh3rf1Q69ZI1 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC15.05■□□□□ -0
Sh3rf1Q69ZI1 Gm9727-201ENSMUST00000161387 555 ntBASIC15.05■□□□□ -0
Sh3rf1Q69ZI1 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC15.05■□□□□ -0
Sh3rf1Q69ZI1 AC090659.1-201ENSMUST00000224334 768 ntBASIC15.05■□□□□ -0
Sh3rf1Q69ZI1 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Sh3rf1Q69ZI1 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Sh3rf1Q69ZI1 Appbp2-201ENSMUST00000018625 6463 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Sh3rf1Q69ZI1 Lrwd1-201ENSMUST00000006301 2473 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Retrieved 100 of 76,532 protein–RNA pairs in 41.5 ms