Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Col28a1Q2UY11 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col28a1Q2UY11 Samd14-201ENSMUST00000055947 3318 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col28a1Q2UY11 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col28a1Q2UY11 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col28a1Q2UY11 Edem3-201ENSMUST00000059498 6327 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col28a1Q2UY11 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC14.43□□□□□ -0.1
Col28a1Q2UY11 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col28a1Q2UY11 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Col28a1Q2UY11 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Col28a1Q2UY11 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC14.43□□□□□ -0.1
Col28a1Q2UY11 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC14.43□□□□□ -0.1
Col28a1Q2UY11 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC14.43□□□□□ -0.1
Col28a1Q2UY11 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col28a1Q2UY11 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col28a1Q2UY11 Slc4a7-201ENSMUST00000057015 8132 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col28a1Q2UY11 Fbxl19-203ENSMUST00000186207 3178 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col28a1Q2UY11 Vash1-201ENSMUST00000021681 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col28a1Q2UY11 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col28a1Q2UY11 Celf4-206ENSMUST00000224553 1729 ntBASIC14.43□□□□□ -0.1
Col28a1Q2UY11 Tmem39a-214ENSMUST00000171687 2667 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Col28a1Q2UY11 Nfasc-208ENSMUST00000188307 3049 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Col28a1Q2UY11 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col28a1Q2UY11 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col28a1Q2UY11 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col28a1Q2UY11 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Col28a1Q2UY11 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col28a1Q2UY11 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC14.43□□□□□ -0.1
Col28a1Q2UY11 Gm26852-201ENSMUST00000180691 5751 ntTSL 5 BASIC14.43□□□□□ -0.1
Col28a1Q2UY11 Pex12-202ENSMUST00000108146 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col28a1Q2UY11 Tacc1-202ENSMUST00000084512 6471 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col28a1Q2UY11 Ubc-203ENSMUST00000156249 2581 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
Col28a1Q2UY11 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col28a1Q2UY11 Bbs7-203ENSMUST00000108156 2687 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col28a1Q2UY11 Marveld2-203ENSMUST00000168772 1888 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
Col28a1Q2UY11 Gm43195-201ENSMUST00000200614 2332 ntBASIC14.42□□□□□ -0.1
Col28a1Q2UY11 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC14.42□□□□□ -0.1
Col28a1Q2UY11 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col28a1Q2UY11 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col28a1Q2UY11 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col28a1Q2UY11 Pth2r-201ENSMUST00000027083 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col28a1Q2UY11 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col28a1Q2UY11 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Col28a1Q2UY11 Cpeb2-205ENSMUST00000169035 7050 ntAPPRIS P2 TSL 5 BASIC14.42□□□□□ -0.1
Col28a1Q2UY11 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Col28a1Q2UY11 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC14.42□□□□□ -0.1
Col28a1Q2UY11 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Col28a1Q2UY11 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC14.42□□□□□ -0.1
Col28a1Q2UY11 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Col28a1Q2UY11 Gm9172-201ENSMUST00000212092 954 ntBASIC14.42□□□□□ -0.1
Col28a1Q2UY11 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col28a1Q2UY11 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col28a1Q2UY11 Apol8-202ENSMUST00000089450 2498 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Col28a1Q2UY11 Zfp503-201ENSMUST00000043409 4216 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col28a1Q2UY11 Thumpd1-201ENSMUST00000033236 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col28a1Q2UY11 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
Col28a1Q2UY11 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col28a1Q2UY11 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col28a1Q2UY11 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col28a1Q2UY11 Mib2-201ENSMUST00000103176 3642 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col28a1Q2UY11 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col28a1Q2UY11 Myrf-201ENSMUST00000088013 5674 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Col28a1Q2UY11 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col28a1Q2UY11 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col28a1Q2UY11 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col28a1Q2UY11 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Gm42632-201ENSMUST00000201707 2411 ntBASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Gm44357-201ENSMUST00000195897 142 ntBASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Gm19658-201ENSMUST00000196231 138 ntBASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Gm44367-201ENSMUST00000196836 138 ntBASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Gm44350-201ENSMUST00000197197 138 ntBASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Gm44390-201ENSMUST00000197533 144 ntBASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Gm44313-201ENSMUST00000198018 138 ntBASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Gm44486-201ENSMUST00000198508 138 ntBASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Gm44454-201ENSMUST00000198541 138 ntBASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Gm44314-201ENSMUST00000199263 138 ntBASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Gm44394-201ENSMUST00000199558 138 ntBASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Gm44484-201ENSMUST00000199873 138 ntBASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Gm44466-201ENSMUST00000200264 138 ntBASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Gm44359-201ENSMUST00000200671 138 ntBASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 55.9 ms