Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Gm38266-201ENSMUST00000194931 421 ntBASIC19.38■□□□□ 0.69
Col18a1P39061 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC19.38■□□□□ 0.69
Col18a1P39061 Wfdc1-202ENSMUST00000212901 921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col18a1P39061 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col18a1P39061 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col18a1P39061 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col18a1P39061 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC19.38■□□□□ 0.69
Col18a1P39061 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col18a1P39061 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col18a1P39061 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
Col18a1P39061 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col18a1P39061 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC19.37■□□□□ 0.69
Col18a1P39061 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Col18a1P39061 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col18a1P39061 Ufc1-202ENSMUST00000111302 914 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col18a1P39061 Litaf-202ENSMUST00000117360 763 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
Col18a1P39061 6330418K02Rik-201ENSMUST00000124298 743 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Col18a1P39061 Gm45692-201ENSMUST00000131138 557 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Col18a1P39061 Gm2639-201ENSMUST00000156881 1297 ntBASIC19.37■□□□□ 0.69
Col18a1P39061 Tmem205-203ENSMUST00000213698 705 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
Col18a1P39061 AC133598.1-201ENSMUST00000224327 660 ntBASIC19.37■□□□□ 0.69
Col18a1P39061 Wdr83-201ENSMUST00000093357 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col18a1P39061 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Col18a1P39061 Prok2-202ENSMUST00000032152 1423 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Col18a1P39061 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
Col18a1P39061 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col18a1P39061 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
Col18a1P39061 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col18a1P39061 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col18a1P39061 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col18a1P39061 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col18a1P39061 Fpr1-201ENSMUST00000061516 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col18a1P39061 Gm16342-201ENSMUST00000124025 1025 ntBASIC19.37■□□□□ 0.69
Col18a1P39061 Egfl7-208ENSMUST00000149789 683 ntTSL 3 BASIC19.37■□□□□ 0.69
Col18a1P39061 Gm16570-201ENSMUST00000161951 436 ntBASIC19.37■□□□□ 0.69
Col18a1P39061 Caly-203ENSMUST00000211044 1029 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Col18a1P39061 Gm17823-201ENSMUST00000217830 1006 ntBASIC19.37■□□□□ 0.69
Col18a1P39061 Prss2-201ENSMUST00000070380 815 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col18a1P39061 Tmem40-201ENSMUST00000072933 1272 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col18a1P39061 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col18a1P39061 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Col18a1P39061 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col18a1P39061 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Col18a1P39061 Tmem150b-202ENSMUST00000086364 2822 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Col18a1P39061 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
Col18a1P39061 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col18a1P39061 Acy1-201ENSMUST00000024031 1529 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col18a1P39061 Gm10339-203ENSMUST00000225409 1671 ntBASIC19.36■□□□□ 0.69
Col18a1P39061 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col18a1P39061 Ankra2-208ENSMUST00000226100 1476 ntBASIC19.36■□□□□ 0.69
Col18a1P39061 Dnm3os-203ENSMUST00000185878 557 ntTSL 5 BASIC19.36■□□□□ 0.69
Col18a1P39061 Gm42303-201ENSMUST00000209960 1170 ntTSL 5 BASIC19.36■□□□□ 0.69
Col18a1P39061 Gm45880-201ENSMUST00000213041 853 ntBASIC19.36■□□□□ 0.69
Col18a1P39061 Atpif1-201ENSMUST00000067496 539 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col18a1P39061 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col18a1P39061 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col18a1P39061 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col18a1P39061 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col18a1P39061 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col18a1P39061 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col18a1P39061 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
Col18a1P39061 Rpl28-ps3-201ENSMUST00000116058 393 ntBASIC19.35■□□□□ 0.69
Col18a1P39061 1700012C08Rik-201ENSMUST00000141554 363 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Col18a1P39061 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col18a1P39061 Ablim2-213ENSMUST00000150146 415 ntTSL 2 BASIC19.35■□□□□ 0.69
Col18a1P39061 Gm16315-201ENSMUST00000163009 783 ntTSL 3 BASIC19.35■□□□□ 0.69
Col18a1P39061 Mettl6-204ENSMUST00000227595 1027 ntBASIC19.35■□□□□ 0.69
Col18a1P39061 Dnajc17-201ENSMUST00000038439 1008 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col18a1P39061 Rwdd3-201ENSMUST00000039761 1145 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col18a1P39061 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col18a1P39061 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col18a1P39061 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col18a1P39061 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col18a1P39061 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col18a1P39061 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
Col18a1P39061 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Col18a1P39061 Pdhx-202ENSMUST00000111183 2078 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Col18a1P39061 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col18a1P39061 Gm12176-201ENSMUST00000121420 875 ntBASIC19.34■□□□□ 0.69
Col18a1P39061 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col18a1P39061 Selenoh-205ENSMUST00000189636 499 ntAPPRIS ALT2 TSL 3 BASIC19.34■□□□□ 0.69
Col18a1P39061 Gm38671-201ENSMUST00000200573 130 ntBASIC19.34■□□□□ 0.69
Col18a1P39061 Gm43818-201ENSMUST00000200605 466 ntBASIC19.34■□□□□ 0.69
Col18a1P39061 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC19.34■□□□□ 0.69
Col18a1P39061 Lyzl6-201ENSMUST00000021328 900 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col18a1P39061 Cebpe-201ENSMUST00000064290 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col18a1P39061 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Col18a1P39061 Gm7993-201ENSMUST00000200970 1384 ntBASIC19.34■□□□□ 0.69
Col18a1P39061 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Col18a1P39061 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col18a1P39061 Map3k8-201ENSMUST00000025078 2507 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col18a1P39061 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col18a1P39061 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Col18a1P39061 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col18a1P39061 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Col18a1P39061 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col18a1P39061 Ins2-205ENSMUST00000105933 552 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col18a1P39061 Ins2-206ENSMUST00000105934 480 ntAPPRIS P1 TSL 3 BASIC19.34■□□□□ 0.69
Col18a1P39061 Snap25-202ENSMUST00000110098 1014 ntAPPRIS ALT1 TSL 3 BASIC19.34■□□□□ 0.69
Col18a1P39061 Gm12485-201ENSMUST00000119641 291 ntBASIC19.34■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 25.9 ms