Protein–RNA interactions for Protein: O70209

Pdlim3, PDZ and LIM domain protein 3, mousemouse

Known RBP Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pdlim3O70209 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Pdlim3O70209 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Pdlim3O70209 Gm45546-201ENSMUST00000211053 2394 ntBASIC13.48□□□□□ -0.25
Pdlim3O70209 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Pdlim3O70209 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Pdlim3O70209 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Pdlim3O70209 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Pdlim3O70209 Gm11453-201ENSMUST00000117318 1007 ntBASIC13.48□□□□□ -0.25
Pdlim3O70209 Gm15372-201ENSMUST00000120729 834 ntBASIC13.48□□□□□ -0.25
Pdlim3O70209 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC13.48□□□□□ -0.25
Pdlim3O70209 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC13.48□□□□□ -0.25
Pdlim3O70209 Otx2os1-206ENSMUST00000228153 787 ntBASIC13.48□□□□□ -0.25
Pdlim3O70209 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Pdlim3O70209 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Pdlim3O70209 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Pdlim3O70209 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Pdlim3O70209 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Pdlim3O70209 Serinc1-201ENSMUST00000020027 2880 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Pdlim3O70209 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
Pdlim3O70209 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Pdlim3O70209 Mon1a-202ENSMUST00000191906 2821 ntTSL 2 BASIC13.48□□□□□ -0.25
Pdlim3O70209 Taok2-201ENSMUST00000071268 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Pdlim3O70209 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Pdlim3O70209 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Pdlim3O70209 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Pdlim3O70209 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Pdlim3O70209 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Pdlim3O70209 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Pdlim3O70209 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Pdlim3O70209 Gm28496-202ENSMUST00000137742 2752 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Pdlim3O70209 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Pdlim3O70209 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Pdlim3O70209 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Pdlim3O70209 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Pdlim3O70209 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC13.47□□□□□ -0.25
Pdlim3O70209 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC13.47□□□□□ -0.25
Pdlim3O70209 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Pdlim3O70209 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC13.47□□□□□ -0.25
Pdlim3O70209 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Pdlim3O70209 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Pdlim3O70209 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Pdlim3O70209 Rest-202ENSMUST00000113449 6924 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Pdlim3O70209 Pja1-205ENSMUST00000167246 2666 ntAPPRIS P4 TSL 1 (best) BASIC13.47□□□□□ -0.25
Pdlim3O70209 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Pdlim3O70209 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Pdlim3O70209 Lrp11-203ENSMUST00000130590 3220 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Pdlim3O70209 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Pdlim3O70209 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC13.47□□□□□ -0.25
Pdlim3O70209 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC13.47□□□□□ -0.25
Pdlim3O70209 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
Pdlim3O70209 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC13.47□□□□□ -0.25
Pdlim3O70209 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Pdlim3O70209 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Pdlim3O70209 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Pdlim3O70209 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
Pdlim3O70209 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
Pdlim3O70209 Ino80-202ENSMUST00000110808 3928 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Pdlim3O70209 Il2rb-202ENSMUST00000163494 1894 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Pdlim3O70209 Gm43399-201ENSMUST00000202546 2374 ntBASIC13.46□□□□□ -0.25
Pdlim3O70209 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Pdlim3O70209 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Pdlim3O70209 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Pdlim3O70209 Dmtn-202ENSMUST00000022695 4080 ntTSL 5 BASIC13.46□□□□□ -0.25
Pdlim3O70209 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Pdlim3O70209 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Pdlim3O70209 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Pdlim3O70209 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Pdlim3O70209 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Pdlim3O70209 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Pdlim3O70209 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Pdlim3O70209 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Pdlim3O70209 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Pdlim3O70209 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC13.46□□□□□ -0.25
Pdlim3O70209 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
Pdlim3O70209 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Pdlim3O70209 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Pdlim3O70209 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC13.46□□□□□ -0.25
Pdlim3O70209 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC13.46□□□□□ -0.25
Pdlim3O70209 AC153889.1-201ENSMUST00000219257 330 ntBASIC13.46□□□□□ -0.25
Pdlim3O70209 AC124569.2-201ENSMUST00000225998 818 ntBASIC13.46□□□□□ -0.25
Pdlim3O70209 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC13.46□□□□□ -0.25
Pdlim3O70209 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Pdlim3O70209 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC13.46□□□□□ -0.25
Pdlim3O70209 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
Pdlim3O70209 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Pdlim3O70209 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Pdlim3O70209 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Pdlim3O70209 Gm44981-201ENSMUST00000205549 1943 ntBASIC13.46□□□□□ -0.25
Pdlim3O70209 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
Pdlim3O70209 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC13.46□□□□□ -0.26
Pdlim3O70209 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.26
Pdlim3O70209 Col7a1-202ENSMUST00000112070 9250 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.26
Pdlim3O70209 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
Pdlim3O70209 Tpr-203ENSMUST00000124973 7430 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.26
Pdlim3O70209 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.26
Pdlim3O70209 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
Pdlim3O70209 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Pdlim3O70209 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC13.45□□□□□ -0.26
Pdlim3O70209 Psma3-202ENSMUST00000160027 2846 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Pdlim3O70209 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms